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    dmrta2 DMRT-like family A2 [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102221849, updated on 10-Mar-2024

    Summary

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    Gene symbol
    dmrta2
    Gene description
    DMRT-like family A2
    See related
    Ensembl:ENSXMAG00000003327
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Also known as
    dmrt5
    Orthologs
    human zebrafish all
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    Genomic context

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    See dmrta2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 9 NC_036451.1 (15638171..15641517)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372340.1 (350237..352388)

    Chromosome 9 - NC_036451.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) Neighboring gene Fas (TNFRSF6) associated factor 1 Neighboring gene ELAV like neuron-specific RNA binding protein 4 Neighboring gene uncharacterized LOC102223215

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tissue-specific expression of dmrt genes in embryos and adults of the platyfish Xiphophorus maculatus. Veith AM, et al. Zebrafish, 2006. PMID 18377213
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in germ cell development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sex differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    doublesex- and mab-3-related transcription factor A2
    Names
    Doublesex- and mab-3-related transcription factor A2
    doublesex- and mab-3-related transcription factor 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036451.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      15638171..15641517
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005806362.2 → XP_005806419.1  doublesex- and mab-3-related transcription factor A2

      See identical proteins and their annotated locations for XP_005806419.1

      UniProtKB/Swiss-Prot
      Q2I327
      Related
      ENSXMAP00000003337.1, ENSXMAT00000003342.2
      Conserved Domains (2) summary
      pfam00751
      Location:53 → 99
      DM; DM DNA binding domain
      cl21463
      Location:258 → 299
      UBA_like_SF; UBA domain-like superfamily
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2I327.1 GenPept UniProtKB/Swiss-Prot:Q2I327

    Gene LinkOut

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