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    NFIL3 nuclear factor, interleukin 3 regulated [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102351182, updated on 30-Apr-2024

    Summary

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    Gene symbol
    NFIL3
    Gene description
    nuclear factor, interleukin 3 regulated
    See related
    Ensembl:ENSLACG00000006631
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Orthologs
    human zebrafish all
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    Genomic context

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    See NFIL3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 1 NC_088139.1 (105699943..105723581, complement)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005820130.1 (206097..229607)

    Chromosome 1 - NC_088139.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135355693 Neighboring gene AU RNA binding protein/enoyl-CoA hydratase Neighboring gene actin, cytoplasmic type 5 Neighboring gene ubiquitin-ribosomal protein eL40 fusion protein-like Neighboring gene receptor tyrosine kinase-like orphan receptor 2 Neighboring gene FMR1-interacting protein NUFIP1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear factor interleukin-3-regulated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088139.1 Reference fLatCha1.pri

      Range
      105699943..105723581 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006004977.2 → XP_006005039.1  nuclear factor interleukin-3-regulated protein

      UniProtKB/TrEMBL
      H3ACW0
      Related
      ENSLACP00000007481.1, ENSLACT00000007543.1
      Conserved Domains (2) summary
      cd14694
      Location:67 → 126
      bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
      pfam06529
      Location:125 → 451
      Vert_IL3-reg_TF; Vertebrate interleukin-3 regulated transcription factor
    Nucleotide Protein
    Heading Accession and Version

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