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    EBF3 EBF transcription factor 3 [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102563939, updated on 8-May-2024

    Summary

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    Gene symbol
    EBF3
    Gene description
    EBF transcription factor 3
    Locus tag
    Y1Q_0012881
    See related
    EnsemblRapid:ENSAMIG00015014029
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See EBF3 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 6 NC_081829.1 (77818672..77960502)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708463.1 (6555581..6695693, complement)

    Chromosome 6 - NC_081829.1Genomic Context describing neighboring genes Neighboring gene chromosome 6 C10orf143 homolog Neighboring gene uncharacterized LOC109282077 Neighboring gene uncharacterized LOC109282079 Neighboring gene O-6-methylguanine-DNA methyltransferase Neighboring gene uncharacterized LOC102564548

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor COE3
    Names
    early B cell factor 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081829.1 Reference rAllMis1 Primary Assembly

      Range
      77818672..77960502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019482898.2 → XP_019338443.1  transcription factor COE3 isoform X1

      UniProtKB/TrEMBL
      A0A151P4L4
      Conserved Domains (3) summary
      cd01175
      Location:264 → 348
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16422
      Location:21 → 247
      COE1_DBD; Transcription factor COE1 DNA-binding domain
      pfam16423
      Location:349 → 392
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain

    2. XM_019482902.2 → XP_019338447.1  transcription factor COE3 isoform X5

      UniProtKB/TrEMBL
      A0A151P4D2
      Conserved Domains (3) summary
      cd01175
      Location:264 → 348
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16422
      Location:21 → 247
      COE1_DBD; Transcription factor COE1 DNA-binding domain
      pfam16423
      Location:349 → 392
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain

    3. XM_006277689.4 → XP_006277751.1  transcription factor COE3 isoform X2

      See identical proteins and their annotated locations for XP_006277751.1

      UniProtKB/TrEMBL
      A0A151P4L4
      Related
      ENSAMIP00015018366.1, ENSAMIT00015026271.1
      Conserved Domains (3) summary
      cd01175
      Location:263 → 347
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16423
      Location:348 → 391
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain
      pfam16422
      Location:21 → 247
      COE1_DBD; Transcription factor COE1 DNA-binding domain

    4. XM_059730023.1 → XP_059586006.1  transcription factor COE3 isoform X6

    5. XM_059730022.1 → XP_059586005.1  transcription factor COE3 isoform X3

    6. XM_059730024.1 → XP_059586007.1  transcription factor COE3 isoform X7

    7. XM_006277690.4 → XP_006277752.1  transcription factor COE3 isoform X4

      See identical proteins and their annotated locations for XP_006277752.1

      UniProtKB/TrEMBL
      A0A151P4L4
      Conserved Domains (3) summary
      cd01175
      Location:254 → 338
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16423
      Location:339 → 382
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain
      pfam16422
      Location:21 → 247
      COE1_DBD; Transcription factor COE1 DNA-binding domain

    8. XM_019482903.2 → XP_019338448.1  transcription factor COE3 isoform X8

      UniProtKB/TrEMBL
      A0A151P4D2
      Conserved Domains (3) summary
      cd01175
      Location:254 → 338
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16422
      Location:21 → 247
      COE1_DBD; Transcription factor COE1 DNA-binding domain
      pfam16423
      Location:339 → 382
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain
    Nucleotide Protein
    Heading Accession and Version

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