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    LOC102630748 alpha-copaene synthase-like [ Citrus sinensis (sweet orange) ]

    Gene ID: 102630748, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC102630748
    Gene description
    alpha-copaene synthase-like
    Locus tag
    KPL70_026673
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Citrus sinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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    Genomic context

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    See LOC102630748 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current DVS_A1.0 (GCF_022201045.2) 9 NC_068564.1 (25195021..25197729, complement)
    102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 4 NC_023049.1 (8966791..8969297, complement)

    Chromosome 9 - NC_068564.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC102630535 Neighboring gene alpha-copaene synthase-like Neighboring gene alpha-copaene synthase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables terpene synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in diterpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-copaene synthase-like
    Names
    alpha-humulene/(-)-(E)-beta-caryophyllene synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DVS_A1.0 Primary Assembly

    Genomic

    1. NC_068564.1 Reference DVS_A1.0 Primary Assembly

      Range
      25195021..25197729 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_052434540.1 → XP_052290500.1  alpha-copaene synthase-like isoform X2

    2. XM_052434539.1 → XP_052290499.1  alpha-copaene synthase-like isoform X1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases