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    slco4a1 solute carrier organic anion transporter family, member 4A1 [ Lepisosteus oculatus (spotted gar) ]

    Gene ID: 102683963, updated on 23-Oct-2024

    Summary

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    Gene symbol
    slco4a1
    Gene description
    solute carrier organic anion transporter family, member 4A1
    See related
    Ensembl:ENSLOCG00000005933
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lepisosteus oculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
    Orthologs
    human zebrafish all
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    Genomic context

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    See slco4a1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 16 NC_090711.1 (3554012..3598139, complement)
    101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG18 NC_023196.1 (12142018..12186234)

    Chromosome 16 - NC_090711.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138223309 Neighboring gene RAD21 cohesin complex component like 1 Neighboring gene neurotensin receptor 1 (high affinity) Neighboring gene uncharacterized LOC107079607 Neighboring gene uncharacterized LOC138223327

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sodium-independent organic anion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sodium-independent organic anion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    solute carrier organic anion transporter family member 4A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLepOcu1.hap2

    Genomic

    1. NC_090711.1 Reference fLepOcu1.hap2

      Range
      3554012..3598139 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015365217.2 → XP_015220703.2  solute carrier organic anion transporter family member 4A1 isoform X3

    2. XM_015365209.2 → XP_015220695.2  solute carrier organic anion transporter family member 4A1 isoform X1

    3. XM_006639690.3 → XP_006639753.2  solute carrier organic anion transporter family member 4A1 isoform X2

    4. XM_015365207.2 → XP_015220693.2  solute carrier organic anion transporter family member 4A1 isoform X1

    5. XM_069179409.1 → XP_069035510.1  solute carrier organic anion transporter family member 4A1 isoform X1

    6. XM_015365208.2 → XP_015220694.2  solute carrier organic anion transporter family member 4A1 isoform X1

    7. XM_015365210.2 → XP_015220696.2  solute carrier organic anion transporter family member 4A1 isoform X1

    8. XM_015365213.2 → XP_015220699.2  solute carrier organic anion transporter family member 4A1 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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