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    ngfb nerve growth factor b (beta polypeptide) [ Lepisosteus oculatus (spotted gar) ]

    Gene ID: 102692738, updated on 23-Oct-2024

    Summary

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    Gene symbol
    ngfb
    Gene description
    nerve growth factor b (beta polypeptide)
    See related
    Ensembl:ENSLOCG00000017923
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lepisosteus oculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
    Also known as
    ngf
    Orthologs
    human zebrafish all
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    Genomic context

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    See ngfb in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 5 NC_090700.1 (33087755..33128551)
    101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG3 NC_023181.1 (29313557..29353194)

    Chromosome 5 - NC_090700.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily A member 2 Neighboring gene potassium voltage-gated channel subfamily A member 3-like Neighboring gene tetraspanin 2a Neighboring gene solute carrier family 25 member 55a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables growth factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nerve growth factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in memory IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in modulation of chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of neuron apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nerve development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nerve growth factor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron projection morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peripheral nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of collateral sprouting IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of peptidyl-serine phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nerve growth factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLepOcu1.hap2

    Genomic

    1. NC_090700.1 Reference fLepOcu1.hap2

      Range
      33087755..33128551
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015342140.2 → XP_015197626.1  nerve growth factor

      UniProtKB/TrEMBL
      W5NN17
      Conserved Domains (1) summary
      pfam00243
      Location:122 → 230
      NGF; Nerve growth factor family

    2. XM_015342141.2 → XP_015197627.1  nerve growth factor

      UniProtKB/TrEMBL
      W5NN17
      Related
      ENSLOCP00000022026.1
      Conserved Domains (1) summary
      pfam00243
      Location:122 → 230
      NGF; Nerve growth factor family
    Nucleotide Protein
    Heading Accession and Version

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