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    clcn1b chloride channel, voltage-sensitive 1b [ Lepisosteus oculatus (spotted gar) ]

    Gene ID: 102696420, updated on 23-Oct-2024

    Summary

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    Gene symbol
    clcn1b
    Gene description
    chloride channel, voltage-sensitive 1b
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lepisosteus oculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
    Orthologs
    zebrafish all
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    Genomic context

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    See clcn1b in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 23 NC_090718.1 (2014464..2047559)
    101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG26 NC_023204.1 (13686674..13696398)

    Chromosome 23 - NC_090718.1Genomic Context describing neighboring genes Neighboring gene rap1 GTPase-activating protein 2-like Neighboring gene serine/threonine/tyrosine kinase 1b Neighboring gene caspase 2, apoptosis-related cysteine peptidase Neighboring gene family with sequence similarity 131 member Bb Neighboring gene zyxin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables voltage-gated chloride channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chloride transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chloride channel protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLepOcu1.hap2

    Genomic

    1. NC_090718.1 Reference fLepOcu1.hap2

      Range
      2014464..2047559
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_069182786.1 → XP_069038887.1  chloride channel protein 1 isoform X3

    2. XM_069182784.1 → XP_069038885.1  chloride channel protein 1 isoform X1

    3. XM_069182785.1 → XP_069038886.1  chloride channel protein 1 isoform X2

    4. XM_069182783.1 → XP_069038884.1  chloride channel protein 1 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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