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    sftpbb surfactant protein Bb [ Astyanax mexicanus (Mexican tetra) ]

    Gene ID: 103045293, updated on 11-Mar-2024

    Summary

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    Gene symbol
    sftpbb
    Gene description
    surfactant protein Bb
    See related
    EnsemblRapid:ENSAMXG00025027564
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Astyanax mexicanus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
    Also known as
    sftpb
    Orthologs
    zebrafish all
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    Genomic context

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    See sftpbb in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current AstMex3_surface (GCF_023375975.1) 22 NC_064429.1 (1339921..1350675, complement)
    102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) Unplaced Scaffold NW_019172865.1 (73364..84069, complement)

    Chromosome 22 - NC_064429.1Genomic Context describing neighboring genes Neighboring gene chromosome 22 C2orf68 homolog Neighboring gene ubiquitin specific peptidase 39 Neighboring gene southpaw Neighboring gene ankyrin 1, erythrocytic a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in sphingolipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    surfactant protein Bb
    Names
    surfactant protein B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AstMex3_surface

    Genomic

    1. NC_064429.1 Reference AstMex3_surface

      Range
      1339921..1350675 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007236175.4 → XP_007236237.1  surfactant protein Bb

      UniProtKB/TrEMBL
      A0A8B9HG11, A0A8B9HI55
      Related
      ENSAMXP00025045122.1, ENSAMXT00025057670.1
      Conserved Domains (1) summary
      smart00741
      Location:159 → 232
      SapB; Saposin (B) Domains
    Nucleotide Protein
    Heading Accession and Version

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