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    OCLN occludin [ Eptesicus fuscus (big brown bat) ]

    Gene ID: 103305171, updated on 30-Mar-2024

    Summary

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    Gene symbol
    OCLN
    Gene description
    occludin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Eptesicus fuscus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Eptesicus
    Orthologs
    human mouse all
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    Genomic context

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    See OCLN in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_03 current DD_ASM_mEF_20220401 (GCF_027574615.1) 4 NC_072476.1 (76203643..76249705, complement)
    101 previous assembly EptFus1.0 (GCF_000308155.1) Unplaced Scaffold NW_007370656.1 (19667856..19714010)

    Chromosome 4 - NC_072476.1Genomic Context describing neighboring genes Neighboring gene NLR family apoptosis inhibitory protein Neighboring gene general transcription factor IIH subunit 2 Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L23a-like Neighboring gene ferritin light chain-like Neighboring gene MARVEL domain containing 2 Neighboring gene RAD17 checkpoint clamp loader component Neighboring gene adenylate kinase 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Claudin gene expression patterns do not associate with interspecific differences in paracellular nutrient absorption. Price ER, et al. Comp Biochem Physiol B Biochem Mol Biol, 2016 Jan. PMID 26393434
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in bicellular tight junction assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    occludin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027574615.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DD_ASM_mEF_20220401

    Genomic

    1. NC_072476.1 Reference DD_ASM_mEF_20220401

      Range
      76203643..76249705 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054715192.1 → XP_054571167.1  occludin isoform X3

    2. XM_054715191.1 → XP_054571166.1  occludin isoform X2

    3. XM_028139607.2 → XP_027995408.1  occludin isoform X1

      Conserved Domains (2) summary
      pfam01284
      Location:58 → 262
      MARVEL; Membrane-associating domain
      pfam07303
      Location:419 → 518
      Occludin_ELL; Occludin homology domain

    4. XM_008161901.3 → XP_008160123.1  occludin isoform X1

      Conserved Domains (2) summary
      pfam01284
      Location:58 → 262
      MARVEL; Membrane-associating domain
      pfam07303
      Location:419 → 518
      Occludin_ELL; Occludin homology domain

    5. XM_028139608.2 → XP_027995409.1  occludin isoform X1

      Conserved Domains (2) summary
      pfam01284
      Location:58 → 262
      MARVEL; Membrane-associating domain
      pfam07303
      Location:419 → 518
      Occludin_ELL; Occludin homology domain

    6. XM_054715190.1 → XP_054571165.1  occludin isoform X1

    7. XM_054715193.1 → XP_054571168.1  occludin isoform X4

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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