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    LOC103376475 uncharacterized LOC103376475 [ Stegastes partitus (bicolor damselfish) ]

    Gene ID: 103376475, updated on 31-Jan-2024

    Summary

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    Gene symbol
    LOC103376475
    Gene description
    uncharacterized LOC103376475
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Stegastes partitus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
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    Genomic context

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    See LOC103376475 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007577732.1 (1750214..1776255, complement)

    NW_007577732.1Genomic Context describing neighboring genes Neighboring gene interferon-induced, double-stranded RNA-activated protein kinase-like Neighboring gene interferon-induced, double-stranded RNA-activated protein kinase-like Neighboring gene uncharacterized LOC103373438 Neighboring gene G patch domain containing 11 Neighboring gene HEAT repeat containing 5B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_007577732 unplaced scaffold reference Stegastes_partitus-1.0.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC103376475

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Stegastes_partitus-1.0.2

    Genomic

    1. NW_007577732.1 Reference Stegastes_partitus-1.0.2

      Range
      1750214..1776255 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008306855.1 → XP_008305077.1  uncharacterized protein LOC103376475

      UniProtKB/TrEMBL
      A0A9Y4U354
      Conserved Domains (6) summary
      smart00220
      Location:403 → 679
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      smart00358
      Location:802 → 851
      DSRM; Double-stranded RNA binding motif
      cd00048
      Location:216 → 282
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
      cd13996
      Location:990 → 1267
      STKc_EIF2AK; Catalytic domain of the Serine/Threonine kinase, eukaryotic translation Initiation Factor 2-Alpha Kinase
      pfam00035
      Location:7 → 72
      dsrm; Double-stranded RNA binding motif
      cl21453
      Location:397 → 681
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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