U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    HTRA1 HtrA serine peptidase 1 [ Manacus vitellinus (golden-collared manakin) ]

    Gene ID: 103761888, updated on 3-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    HTRA1
    Gene description
    HtrA serine peptidase 1
    Locus tag
    N305_01465
    See related
    Ensembl:ENSMVIG00005015509
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manacus vitellinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Manacus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See HTRA1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current ASM171598v3 (GCF_001715985.3) Unplaced Scaffold NW_021940541.1 (4508728..4542562, complement)
    101 previous assembly ASM171598v1 (GCF_001715985.1) Unplaced Scaffold NW_017220103.1 (4646209..4666370, complement)

    NW_021940541.1Genomic Context describing neighboring genes Neighboring gene deleted in malignant brain tumors 1 protein Neighboring gene deleted in malignant brain tumors 1 protein-like Neighboring gene pleckstrin homology domain containing A1 Neighboring gene transforming acidic coiled-coil containing protein 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in programmed cell death IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOW QUALITY PROTEIN: serine protease HTRA1
    Names
    Serine protease HTRA1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Manacus vitellinus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM171598v3

    Genomic

    1. NW_021940541.1 Reference ASM171598v3

      Range
      4508728..4542562 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029961992.1 → XP_029817852.1  LOW QUALITY PROTEIN: serine protease HTRA1

      Conserved Domains (2) summary
      TIGR02037
      Location:280 → 582
      degP_htrA_DO; periplasmic serine protease, Do/DeqQ family
      pfam00219
      Location:140 → 195
      IGFBP; Insulin-like growth factor binding protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.