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    LOC103804285 splicing factor U2AF 35 kDa subunit [ Acanthisitta chloris (rifleman) ]

    Gene ID: 103804285, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC103804285
    Gene description
    splicing factor U2AF 35 kDa subunit
    Locus tag
    N310_06283
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acanthisitta chloris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Acanthisittidae; Acanthisitta
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    Genomic context

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    See LOC103804285 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM69581v1 (GCF_000695815.1) Unplaced Scaffold NW_008678506.1 (11698..23515, complement)

    NW_008678506.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008678506.1 Unplaced Scaffold Reference ASM69581v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-mRNA 3'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2AF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor U2AF 35 kDa subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Acanthisitta chloris Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM69581v1

    Genomic

    1. NW_008678506.1 Reference ASM69581v1

      Range
      11698..23515 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009076890.1 → XP_009075138.1  splicing factor U2AF 35 kDa subunit isoform X2

      See identical proteins and their annotated locations for XP_009075138.1

      Conserved Domains (2) summary
      pfam00642
      Location:76 → 102
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      cl17169
      Location:1 → 73
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_009076889.1 → XP_009075137.1  splicing factor U2AF 35 kDa subunit isoform X2

      See identical proteins and their annotated locations for XP_009075137.1

      Conserved Domains (2) summary
      pfam00642
      Location:76 → 102
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      cl17169
      Location:1 → 73
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_009076888.1 → XP_009075136.1  splicing factor U2AF 35 kDa subunit isoform X1

      Conserved Domains (2) summary
      cd12538
      Location:46 → 147
      RRM_U2AF35; RNA recognition motif in U2 small nuclear ribonucleoprotein auxiliary factor U2AF 35 kDa subunit (U2AF35)
      pfam00642
      Location:150 → 176
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    Nucleotide Protein
    Heading Accession and Version

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