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    MYF5 myogenic factor 5 [ Pygoscelis adeliae (Adelie penguin) ]

    Gene ID: 103920023, updated on 3-Aug-2024

    Summary

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    Gene symbol
    MYF5
    Gene description
    myogenic factor 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pygoscelis adeliae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Pygoscelis
    Orthologs
    human mouse all
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    Genomic context

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    See MYF5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current ASM69910v1 (GCF_000699105.1) Unplaced Scaffold NW_008825108.1 (1936424..1942355, complement)

    NW_008825108.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase short chain family member 3 Neighboring gene lin-7 homolog A, crumbs cell polarity complex component Neighboring gene myogenic factor 6 Neighboring gene protein tyrosine phosphatase receptor type Q

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008825108.1 Unplaced Scaffold Reference ASM69910v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in muscle organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of myoblast differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myogenic factor 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pygoscelis adeliae Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM69910v1 Primary Assembly

    Genomic

    1. NW_008825108.1 Reference ASM69910v1 Primary Assembly

      Range
      1936424..1942355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009327657.1 → XP_009325932.1  myogenic factor 5

      Conserved Domains (3) summary
      smart00520
      Location:1 → 90
      BASIC; Basic domain in HLH proteins of MYOD family
      pfam00010
      Location:86 → 137
      HLH; Helix-loop-helix DNA-binding domain
      pfam12232
      Location:145 → 170
      Myf5; Myogenic determination factor 5
    Nucleotide Protein
    Heading Accession and Version

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