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    LOC105167248 tubulin beta chain [ Sesamum indicum (sesame) ]

    Gene ID: 105167248, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC105167248
    Gene description
    tubulin beta chain
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sesamum indicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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    Genomic context

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    See LOC105167248 in Genome Data Viewer
    Location:
    chromosome: LG8
    Exon count:
    3
    Annotation release Status Assembly LG Location
    101 current S_indicum_v1.0 (GCF_000512975.1) LG8 NC_026152.1 (198081..200728)

    Linkage Group LG8 - NC_026152.1Genomic Context describing neighboring genes Neighboring gene berberine bridge enzyme-like 23 Neighboring gene dihydroceramide fatty acyl 2-hydroxylase FAH2-like Neighboring gene putative germin-like protein 2-1 Neighboring gene putative germin-like protein 2-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_026152.1 Chromosome LG8 Reference S_indicum_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
    2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubulin beta chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S_indicum_v1.0 Primary Assembly

    Genomic

    1. NC_026152.1 Reference S_indicum_v1.0 Primary Assembly

      Range
      198081..200728
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011086880.2 → XP_011085182.1  tubulin beta chain

      UniProtKB/TrEMBL
      A0A6I9TP73
      Conserved Domains (2) summary
      PLN00220
      Location:65 → 508
      PLN00220; tubulin beta chain; Provisional
      cd02187
      Location:66 → 490
      beta_tubulin; The beta-tubulin family
    Nucleotide Protein
    Heading Accession and Version

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