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    LOC105371961 uncharacterized LOC105371961 [ Homo sapiens (human) ]

    Gene ID: 105371961, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105371961
    Gene description
    uncharacterized LOC105371961
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.1) See more
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    Genomic context

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    See LOC105371961 in Genome Data Viewer
    Location:
    18p11.32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (2350580..2371126)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (2506425..2526999)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47754 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47822 Neighboring gene NANOG hESC enhancer GRCh37_chr18:1969063-1969621 Neighboring gene AIDA pseudogene 3 Neighboring gene uncharacterized LOC105371957 Neighboring gene uncharacterized LOC105371956 Neighboring gene NANOG hESC enhancer GRCh37_chr18:2082631-2083132 Neighboring gene Sharpr-MPRA regulatory region 5248 Neighboring gene MPRA-validated peak3043 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:2350584-2351783 Neighboring gene MPRA-validated peak3044 silencer Neighboring gene MPRA-validated peak3045 silencer Neighboring gene uncharacterized LOC124904235 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:2535575-2536114 Neighboring gene small nucleolar RNA U109 Neighboring gene methyltransferase 4, N6-adenosine

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      2350580..2371126
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_935097.4 RNA Sequence

    2. XR_001753321.2 RNA Sequence

    3. XR_935098.3 RNA Sequence

    4. XR_935095.2 RNA Sequence

    5. XR_935099.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      2506425..2526999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007088312.1 RNA Sequence

    2. XR_007088311.1 RNA Sequence

    3. XR_007088313.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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