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    LINC02172 long intergenic non-protein coding RNA 2172 [ Homo sapiens (human) ]

    Gene ID: 105377443, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC02172provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2172provided by HGNC
    Primary source
    HGNC:HGNC:53034
    See related
    Ensembl:ENSG00000251632 AllianceGenome:HGNC:53034
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02172 in Genome Data Viewer
    Location:
    4q28.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (137545731..137603430)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (140869135..140926838)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (138466885..138524584)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377442 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:138417700-138418253 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21908 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:138458683-138459528 Neighboring gene protocadherin 18 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:138464138-138465055 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21909 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:138494055-138494554 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:138553021-138553521 Neighboring gene uncharacterized LOC101927414 Neighboring gene uncharacterized LOC107986314 Neighboring gene uncharacterized LOC105377444 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:138631775-138632406 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr4:138632407-138633036

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Large-scale concatenation cDNA sequencing. Yu W, et al. Genome Res, 1997 Apr. PMID 9110174, Free PMC Article
    2. A "double adaptor" method for improved shotgun library construction. Andersson B, et al. Anal Biochem, 1996 Apr 5. PMID 8619474
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146553.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC116563, DA299236, U79300
      Related
      ENST00000507365.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      137545731..137603430
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      140869135..140926838
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials