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    LOC105909275 collagen alpha-4(IV) chain-like [ Clupea harengus (Atlantic herring) ]

    Gene ID: 105909275, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC105909275
    Gene description
    collagen alpha-4(IV) chain-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Clupea harengus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
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    Genomic context

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    See LOC105909275 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current Ch_v2.0.2 (GCF_900700415.2) 9 NC_045160.1 (4382917..4398263, complement)

    Chromosome 9 - NC_045160.1Genomic Context describing neighboring genes Neighboring gene insulin receptor substrate 1 Neighboring gene rhomboid domain containing 1 Neighboring gene collagen alpha-2(VIII) chain-like Neighboring gene uncharacterized LOC116221793

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045160.1 Chromosome 9 Reference Ch_v2.0.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-4(IV) chain-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ch_v2.0.2 Primary Assembly

    Genomic

    1. NC_045160.1 Reference Ch_v2.0.2 Primary Assembly

      Range
      4382917..4398263 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042708791.1 → XP_042564725.1  collagen alpha-4(IV) chain-like

      UniProtKB/TrEMBL
      A0A8M1KQ34
      Conserved Domains (2) summary
      PRK07764
      Location:408 → 605
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cl02467
      Location:745 → 850
      C4; C-terminal tandem repeated domain in type 4 procollagen
    Nucleotide Protein
    Heading Accession and Version

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