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    LOC106567065 retinoic acid receptor gamma-A [ Salmo salar (Atlantic salmon) ]

    Gene ID: 106567065, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC106567065
    Gene description
    retinoic acid receptor gamma-A
    See related
    Ensembl:ENSSSAG00000095736
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Also known as
    Rarga
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    Genomic context

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    See LOC106567065 in Genome Data Viewer
    Location:
    chromosome: ssa13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa13 NC_059454.1 (41466681..41538568, complement)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa13 NC_027312.1 (35433347..35501667)

    Chromosome ssa13 - NC_059454.1Genomic Context describing neighboring genes Neighboring gene homeobox protein HoxC13aa Neighboring gene Calcium-binding and coiled-coil domain-containing protein 1 Neighboring gene nuclear receptor subfamily 1 group D member 1 Neighboring gene major facilitator superfamily domain containing 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to corticotropin-releasing hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor gamma-A
    Names
    retinoic acid receptor gamma a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059454.1 Reference Ssal_v3.1

      Range
      41466681..41538568 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014135913.2 → XP_013991388.1  retinoic acid receptor gamma-A isoform X2

      UniProtKB/TrEMBL
      A0A1S3LK94, A0A1S3LKM0
      Conserved Domains (2) summary
      cd06937
      Location:189 → 419
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:83 → 168
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    2. XM_045693284.1 → XP_045549240.1  retinoic acid receptor gamma-A isoform X1

      Related
      ENSSSAP00000175512.1, ENSSSAT00000183325.1

    3. XM_014135917.2 → XP_013991392.1  retinoic acid receptor gamma-A isoform X4

      UniProtKB/TrEMBL
      A0A1S3LK94, A0A1S3LKA0
      Conserved Domains (2) summary
      cd06937
      Location:186 → 416
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 165
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    4. XM_014135916.2 → XP_013991391.1  retinoic acid receptor gamma-A isoform X3

      UniProtKB/TrEMBL
      A0A1S3LK94, A0A1S3LKG3
      Related
      ENSSSAP00000134569.1, ENSSSAT00000186230.1
      Conserved Domains (2) summary
      cd06937
      Location:187 → 417
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 166
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    5. XM_045693285.1 → XP_045549241.1  retinoic acid receptor gamma-A isoform X1

    6. XM_045693287.1 → XP_045549243.1  retinoic acid receptor gamma-A isoform X7

      Related
      ENSSSAP00000080945.2, ENSSSAT00000114629.2

    7. XM_045693286.1 → XP_045549242.1  retinoic acid receptor gamma-A isoform X5

    8. XM_014135919.2 → XP_013991394.1  retinoic acid receptor gamma-A isoform X6

      UniProtKB/TrEMBL
      A0A1S3LK94, B3TDE9
      Related
      ENSSSAP00000175865.1, ENSSSAT00000229277.1
      Conserved Domains (2) summary
      cd06937
      Location:176 → 406
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:71 → 155
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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