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    apln apelin [ Lepisosteus oculatus (spotted gar) ]

    Gene ID: 107077932, updated on 21-Oct-2024

    Summary

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    Gene symbol
    apln
    Gene description
    apelin
    See related
    Ensembl:ENSLOCG00000015277
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lepisosteus oculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
    Orthologs
    human zebrafish all
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    Genomic context

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    See apln in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 8 NC_090703.1 (50456256..50479088, complement)
    101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG7 NC_023185.1 (47473872..47492641, complement)

    Chromosome 8 - NC_090703.1Genomic Context describing neighboring genes Neighboring gene OCRL inositol polyphosphate-5-phosphatase Neighboring gene uncharacterized LOC107077901 Neighboring gene X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound Neighboring gene SAM and SH3 domain containing 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables apelin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hormone activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    apelin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLepOcu1.hap2

    Genomic

    1. NC_090703.1 Reference fLepOcu1.hap2

      Range
      50456256..50479088 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015351784.2 → XP_015207270.1  apelin

      UniProtKB/TrEMBL
      W5NDT8
      Related
      ENSLOCP00000018797.1
      Conserved Domains (1) summary
      pfam15360
      Location:23 → 77
      Apelin; APJ endogenous ligand
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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