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    EXOSC1 exosome component 1 [ Parus major (Great Tit) ]

    Gene ID: 107206702, updated on 3-Aug-2024

    Summary

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    Gene symbol
    EXOSC1
    Gene description
    exosome component 1
    See related
    Ensembl:ENSPMJG00000004134
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Parus major
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
    Orthologs
    human mouse all
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    Genomic context

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    See EXOSC1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current Parus_major1.1 (GCF_001522545.3) 6 NC_031775.1 (20501237..20503668)
    100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 6 NC_029275.1 (19495218..19497571)

    Chromosome 6 - NC_031775.1Genomic Context describing neighboring genes Neighboring gene ubiquitin domain containing 1 Neighboring gene MMS19 homolog, cytosolic iron-sulfur assembly component Neighboring gene zinc finger DHHC-type palmitoyltransferase 16 Neighboring gene phosphoglycerate mutase 1 Neighboring gene ribosomal RNA processing 12 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exosome complex component CSL4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Parus_major1.1 Primary Assembly

    Genomic

    1. NC_031775.1 Reference Parus_major1.1 Primary Assembly

      Range
      20501237..20503668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015632728.3 → XP_015488214.1  exosome complex component CSL4 isoform X3

      Conserved Domains (2) summary
      cd05791
      Location:62 → 154
      S1_CSL4; S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation ...
      pfam14382
      Location:8 → 44
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region

    2. XM_015632729.2 → XP_015488215.1  exosome complex component CSL4 isoform X4

      Related
      ENSPMJP00000005076.1, ENSPMJT00000007125.1
      Conserved Domains (2) summary
      cd05791
      Location:62 → 154
      S1_CSL4; S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation ...
      pfam14382
      Location:8 → 43
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region

    3. XM_033515862.1 → XP_033371753.1  exosome complex component CSL4 isoform X1

      Conserved Domains (2) summary
      cd05791
      Location:79 → 171
      S1_CSL4; CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
      pfam14382
      Location:25 → 59
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region

    4. XM_015632726.3 → XP_015488212.1  exosome complex component CSL4 isoform X2

      Conserved Domains (2) summary
      cd05791
      Location:79 → 171
      S1_CSL4; S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation ...
      pfam14382
      Location:25 → 60
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region
    Nucleotide Protein
    Heading Accession and Version

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