U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    EXOSC1 exosome component 1 [ Parus major (Great Tit) ]

    Gene ID: 107206702, updated on 14-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    EXOSC1
    Gene description
    exosome component 1
    See related
    Ensembl:ENSPMJG00000004134
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Parus major
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Parus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EXOSC1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current Parus_major1.1 (GCF_001522545.3) 6 NC_031775.1 (20501237..20503668)
    100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 6 NC_029275.1 (19495218..19497571)

    Chromosome 6 - NC_031775.1Genomic Context describing neighboring genes Neighboring gene ubiquitin domain containing 1 Neighboring gene MMS19 homolog, cytosolic iron-sulfur assembly component Neighboring gene zinc finger DHHC-type palmitoyltransferase 16 Neighboring gene phosphoglycerate mutase 1 Neighboring gene ribosomal RNA processing 12 homolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    exosome complex component CSL4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Parus_major1.1 Primary Assembly

    Genomic

    1. NC_031775.1 Reference Parus_major1.1 Primary Assembly

      Range
      20501237..20503668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015632728.3 → XP_015488214.1  exosome complex component CSL4 isoform X3

      Conserved Domains (2) summary
      cd05791
      Location:62 → 154
      S1_CSL4; S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation ...
      pfam14382
      Location:8 → 44
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region

    2. XM_015632729.2 → XP_015488215.1  exosome complex component CSL4 isoform X4

      Related
      ENSPMJP00000005076.1, ENSPMJT00000007125.1
      Conserved Domains (2) summary
      cd05791
      Location:62 → 154
      S1_CSL4; S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation ...
      pfam14382
      Location:8 → 43
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region

    3. XM_033515862.1 → XP_033371753.1  exosome complex component CSL4 isoform X1

      Conserved Domains (2) summary
      cd05791
      Location:79 → 171
      S1_CSL4; CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
      pfam14382
      Location:25 → 59
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region

    4. XM_015632726.3 → XP_015488212.1  exosome complex component CSL4 isoform X2

      Conserved Domains (2) summary
      cd05791
      Location:79 → 171
      S1_CSL4; S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation ...
      pfam14382
      Location:25 → 60
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.