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    NOTCH1 notch receptor 1 [ Coturnix japonica (Japanese quail) ]

    Gene ID: 107321700, updated on 14-Mar-2024

    Summary

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    Gene symbol
    NOTCH1
    Gene description
    notch receptor 1
    See related
    Ensembl:ENSCJPG00005008142
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Coturnix japonica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
    Orthologs
    human mouse all
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    Genomic context

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    See NOTCH1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    101 current Coturnix japonica 2.1 (GCF_001577835.2) 17 NC_029532.1 (6304784..6339593)

    Chromosome 17 - NC_029532.1Genomic Context describing neighboring genes Neighboring gene EGF like domain multiple 7 Neighboring gene uncharacterized LOC107321690 Neighboring gene SEC16 homolog A, endoplasmic reticulum export factor Neighboring gene inositol polyphosphate-5-phosphatase E

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029532.1 Chromosome 17 Reference Coturnix japonica 2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Notch binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Notch signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of developmental process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neurogenic locus notch homolog protein 1
    Names
    notch 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coturnix japonica 2.1 Primary Assembly

    Genomic

    1. NC_029532.1 Reference Coturnix japonica 2.1 Primary Assembly

      Range
      6304784..6339593
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015878847.1 → XP_015734333.1  neurogenic locus notch homolog protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C2T728
      Related
      ENSCJPP00005009359.1, ENSCJPT00005014000.1
      Conserved Domains (9) summary
      smart00004
      Location:1442 → 1479
      NL; Domain found in Notch and Lin-12
      cd00054
      Location:945 → 981
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00204
      Location:1922 → 2034
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam00066
      Location:1487 → 1522
      Notch; LNR domain
      pfam06816
      Location:1567 → 1618
      NOD; NOTCH protein
      pfam07684
      Location:1671 → 1727
      NODP; NOTCH protein
      pfam11936
      Location:2474 → 2535
      DUF3454; Domain of unknown function (DUF3454)
      pfam12796
      Location:1932 → 2025
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:1880 → 1925
      ANK; ANK repeat [structural motif]

    2. XM_015878848.1 → XP_015734334.1  neurogenic locus notch homolog protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C2T728
      Conserved Domains (9) summary
      smart00004
      Location:1396 → 1433
      NL; Domain found in Notch and Lin-12
      cd00054
      Location:945 → 981
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00204
      Location:1876 → 1988
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam00066
      Location:1441 → 1476
      Notch; LNR domain
      pfam06816
      Location:1521 → 1572
      NOD; NOTCH protein
      pfam07684
      Location:1625 → 1681
      NODP; NOTCH protein
      pfam11936
      Location:2428 → 2489
      DUF3454; Domain of unknown function (DUF3454)
      pfam12796
      Location:1886 → 1979
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:1834 → 1879
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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