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    Ccm3 programmed cell death protein 10 Ccm3 [ Tetranychus urticae (two-spotted spider mite) ]

    Gene ID: 107363726, updated on 3-Jul-2024

    Summary

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    Gene symbol
    Ccm3
    Gene description
    programmed cell death protein 10 Ccm3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tetranychus urticae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Acariformes; Trombidiformes; Prostigmata; Eleutherengona; Raphignathae; Tetranychoidea; Tetranychidae; Tetranychus
    Orthologs
    fruit fly all
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    Genomic context

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    See Ccm3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current ASM23943v1 (GCF_000239435.1) Unplaced Scaffold NW_015449939.1 (2533875..2535309, complement)

    NW_015449939.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 19 Neighboring gene LIM domain transcription factor LMO4-B Neighboring gene mitochondrial ribosomal protein L38 Neighboring gene BTB/POZ domain-containing protein inc

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015449939 Unplaced Scaffold Reference ASM23943v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of MAP kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of FAR/SIN/STRIPAK complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    programmed cell death protein 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tetranychus urticae Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM23943v1 Primary Assembly

    Genomic

    1. NW_015449939.1 Reference ASM23943v1 Primary Assembly

      Range
      2533875..2535309 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015930998.1 → XP_015786484.1  programmed cell death protein 10

      UniProtKB/TrEMBL
      T1KFZ6
      Conserved Domains (1) summary
      pfam06840
      Location:12 → 162
      DUF1241; Protein of unknown function (DUF1241)

    2. XM_025161145.1 → XP_025016913.1  programmed cell death protein 10

      UniProtKB/TrEMBL
      T1KFZ6
      Conserved Domains (1) summary
      pfam06840
      Location:12 → 162
      DUF1241; Protein of unknown function (DUF1241)
    Nucleotide Protein Strain
    Heading Accession and Version

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