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    TRIM27 tripartite motif containing 27 [ Rousettus aegyptiacus (Egyptian rousette) ]

    Gene ID: 107498085, updated on 30-Mar-2024

    Summary

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    Gene symbol
    TRIM27
    Gene description
    tripartite motif containing 27
    Locus tag
    HJG63_019854
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rousettus aegyptiacus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Rousettinae; Rousettus
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM27 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current mRouAeg1.p (GCF_014176215.1) Unplaced Scaffold NW_023416284.1 (87837386..87853721, complement)
    100 previous assembly Raegyp2.0 (GCF_001466805.2) Unplaced Scaffold NW_015494903.1 (131767..148020, complement)

    NW_023416284.1Genomic Context describing neighboring genes Neighboring gene gamma-tubulin complex component 3-like Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene U6 spliceosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene transfer RNA glutamine (anticodon CUG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of viral transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K63-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein RFP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rousettus aegyptiacus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mRouAeg1.p

    Genomic

    1. NW_023416284.1 Reference mRouAeg1.p

      Range
      87837386..87853721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036237661.1 → XP_036093554.1  zinc finger protein RFP isoform X2

      UniProtKB/TrEMBL
      A0A7J8KIR8
      Conserved Domains (4) summary
      COG0419
      Location:132 → 289
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd15814
      Location:293 → 469
      SPRY_PRY_TRIM27; PRY/SPRY domain in tripartite motif-containing protein 27 (TRIM27), also known as RING finger protein 76 (RNF76)
      cd16594
      Location:13 → 57
      RING-HC_TRIM11_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins, TRIM11 and TRIM27, and similar proteins
      cd19762
      Location:94 → 137
      Bbox2_TRIM7-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM7, TRIM27 and similar proteins

    2. XM_016120705.2 → XP_015976191.1  zinc finger protein RFP isoform X1

      UniProtKB/TrEMBL
      A0A7J8KIY4
      Conserved Domains (4) summary
      COG1196
      Location:140 → 310
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd15814
      Location:315 → 491
      SPRY_PRY_TRIM27; PRY/SPRY domain in tripartite motif-containing protein 27 (TRIM27), also known as RING finger protein 76 (RNF76)
      cd16594
      Location:13 → 57
      RING-HC_TRIM11_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins, TRIM11 and TRIM27, and similar proteins
      cd19762
      Location:94 → 137
      Bbox2_TRIM7-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM7, TRIM27 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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