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    pomgnt2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 108268718, updated on 20-Aug-2024

    Summary

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    Gene symbol
    pomgnt2
    Gene description
    protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
    See related
    EnsemblRapid:ENSIPUG00020017016
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Also known as
    glyt
    Orthologs
    human zebrafish all
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    Genomic context

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    See pomgnt2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 1 NC_030416.2 (17998125..18008229, complement)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 1 NC_030416.1 (17102492..17112610, complement)

    Chromosome 1 - NC_030416.2Genomic Context describing neighboring genes Neighboring gene ferric-chelate reductase 1b Neighboring gene ectonucleoside triphosphate diphosphohydrolase 3 Neighboring gene golgi associated kinase 1A Neighboring gene SNF related kinase a Neighboring gene anoctamin 10a Neighboring gene abhydrolase domain containing 5a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein O-acetylglucosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein O-linked mannosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2
    Names
    glycosyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030416.2 Reference Coco_2.0 Primary Assembly

      Range
      17998125..18008229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_053682196.1 → XP_053538171.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

      UniProtKB/TrEMBL
      A0A2D0RFP4
      Related
      ENSIPUP00020034567.1, ENSIPUT00020040610.1

    2. XM_017473879.3 → XP_017329368.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

      UniProtKB/TrEMBL
      A0A2D0RFP4
      Related
      ENSIPUP00020034569.1, ENSIPUT00020040616.1

    3. XM_017473862.3 → XP_017329351.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

      UniProtKB/TrEMBL
      A0A2D0RFP4
      Related
      ENSIPUP00020034568.1, ENSIPUT00020040613.1

    4. XM_017473852.3 → XP_017329341.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

      UniProtKB/TrEMBL
      A0A2D0RFP4
      Related
      ENSIPUP00020034570.1, ENSIPUT00020040619.1

    RNA

    1. XR_006982805.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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