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    egr2b early growth response 2b [ Lates calcarifer (barramundi perch) ]

    Gene ID: 108876762, updated on 10-Apr-2024

    Summary

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    Gene symbol
    egr2b
    Gene description
    early growth response 2b
    See related
    EnsemblRapid:ENSLCAG00010023481
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lates calcarifer
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
    Also known as
    egr2
    Orthologs
    human zebrafish all
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    Genomic context

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    See egr2b in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) Unplaced Scaffold NW_026117718.1 (482914..485635, complement)
    100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367107.1 (482920..485638, complement)

    NW_026117718.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127141897 Neighboring gene BMS1 ribosome biogenesis factor Neighboring gene 2-aminoethanethiol (cysteamine) dioxygenase a Neighboring gene NHL repeat-containing protein 3 Neighboring gene nuclear receptor binding factor 2b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
    2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    early growth response protein 2b
    Names
    early growth response 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TLL_Latcal_v3 Primary Assembly

    Genomic

    1. NW_026117718.1 Reference TLL_Latcal_v3 Primary Assembly

      Range
      482914..485635 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018666475.2 → XP_018521991.1  early growth response protein 2b

      UniProtKB/TrEMBL
      A0A4W6FIA6, A0A4W6FII2
      Related
      ENSLCAP00010050336.1, ENSLCAT00010051649.2
    Nucleotide Protein
    Heading Accession and Version

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