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    zeb1b zinc finger E-box binding homeobox 1b [ Lates calcarifer (barramundi perch) ]

    Gene ID: 108881565, updated on 14-Mar-2024

    Summary

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    Gene symbol
    zeb1b
    Gene description
    zinc finger E-box binding homeobox 1b
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lates calcarifer
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
    Orthologs
    human zebrafish all
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    Genomic context

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    See zeb1b in Genome Data Viewer
    Location:
    chromosome: LG24
    Exon count:
    8
    Annotation release Status Assembly LG Location
    RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG24 NC_066856.1 (3707382..3754739)
    100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363862.1 (1494423..1541823, complement)

    Linkage Group LG24 - NC_066856.1Genomic Context describing neighboring genes Neighboring gene supervillin a Neighboring gene zinc finger protein 438 Neighboring gene Rho GTPase activating protein 12b Neighboring gene kinesin-1 heavy chain Neighboring gene transfer RNA alanine (anticodon UGC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: zinc finger E-box-binding homeobox 1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TLL_Latcal_v3 Primary Assembly

    Genomic

    1. NC_066856.1 Reference TLL_Latcal_v3 Primary Assembly

      Range
      3707382..3754739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018673640.2 → XP_018529156.1  LOW QUALITY PROTEIN: zinc finger E-box-binding homeobox 1b

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases