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    map3k15 mitogen-activated protein kinase kinase kinase 15 [ Lates calcarifer (barramundi perch) ]

    Gene ID: 108885107, updated on 10-Oct-2024

    Summary

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    Gene symbol
    map3k15
    Gene description
    mitogen-activated protein kinase kinase kinase 15
    See related
    EnsemblRapid:ENSLCAG00010000696
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lates calcarifer
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
    Orthologs
    human zebrafish all
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    Genomic context

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    See map3k15 in Genome Data Viewer
    Location:
    chromosome: LG24
    Exon count:
    30
    Annotation release Status Assembly LG Location
    RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG24 NC_066856.1 (16786685..16805159)
    100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363904.1 (2993587..3011957, complement)

    Linkage Group LG24 - NC_066856.1Genomic Context describing neighboring genes Neighboring gene transferrin receptor 1b Neighboring gene SH3-domain kinase binding protein 1 Neighboring gene toll-like receptor 13 Neighboring gene uncharacterized LOC127139230 Neighboring gene chemokine (C-C motif) ligand 20b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
    2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables MAP kinase kinase kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in MAPK cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitogen-activated protein kinase kinase kinase 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TLL_Latcal_v3 Primary Assembly

    Genomic

    1. NC_066856.1 Reference TLL_Latcal_v3 Primary Assembly

      Range
      16786685..16805159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051067010.1 → XP_050922967.1  mitogen-activated protein kinase kinase kinase 15 isoform X1

      UniProtKB/TrEMBL
      A0AAJ8AYB8

    2. XM_018679301.2 → XP_018534817.1  mitogen-activated protein kinase kinase kinase 15 isoform X2

      UniProtKB/TrEMBL
      A0A4W6BS49, A0A4W6BSR2
      Related
      ENSLCAP00010001290.1, ENSLCAT00010001351.2
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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