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    LOC109088564 myosin-binding protein C, fast-type-like [ Cyprinus carpio (common carp) ]

    Gene ID: 109088564, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC109088564
    Gene description
    myosin-binding protein C, fast-type-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyprinus carpio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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    Genomic context

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    See LOC109088564 in Genome Data Viewer
    Location:
    chromosome: A24
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    101 current ASM1834038v1 (GCF_018340385.1) A24 NC_056595.1 (22689454..22717008)
    100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017545504.1 (139776..159956)

    Chromosome A24 - NC_056595.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing protein 16-like Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene leucine-rich repeat-containing protein 4B-like Neighboring gene protein kinase C and casein kinase substrate in neurons 2 protein-like Neighboring gene SH3 and multiple ankyrin repeat domains protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myosin-binding protein C, fast-type-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1834038v1 Primary Assembly

    Genomic

    1. NC_056595.1 Reference ASM1834038v1 Primary Assembly

      Range
      22689454..22717008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042714791.1 → XP_042570725.1  myosin-binding protein C, fast-type-like isoform X1

      UniProtKB/TrEMBL
      A0A8C2KML8, A0A9Q9VT60
      Conserved Domains (4) summary
      smart00409
      Location:515 → 597
      IG; Immunoglobulin
      smart00410
      Location:813 → 892
      IG_like; Immunoglobulin like
      cd00063
      Location:601 → 687
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00096
      Location:821 → 825
      Ig; Ig strand B [structural motif]

    2. XM_042714792.1 → XP_042570726.1  myosin-binding protein C, fast-type-like isoform X2

      UniProtKB/TrEMBL
      A0A8C2KMZ3, A0A9Q9ZRV0
      Conserved Domains (4) summary
      smart00409
      Location:509 → 591
      IG; Immunoglobulin
      smart00410
      Location:807 → 886
      IG_like; Immunoglobulin like
      cd00063
      Location:595 → 681
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00096
      Location:815 → 819
      Ig; Ig strand B [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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