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    LOC109749263 60S ribosomal protein L35a-1 [ Aegilops tauschii ]

    Gene ID: 109749263, updated on 11-Jan-2024

    Summary

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    Gene symbol
    LOC109749263
    Gene description
    60S ribosomal protein L35a-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aegilops tauschii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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    Genomic context

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    See LOC109749263 in Genome Data Viewer
    Location:
    chromosome: 6D
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current Aet v5.0 (GCF_002575655.2) 6D NC_053040.2 (455307531..455309260)
    101 previous assembly Aet v4.0 (GCF_002575655.1) 6D NC_053040.1 (455871371..455873081)

    Chromosome 6D - NC_053040.2Genomic Context describing neighboring genes Neighboring gene putative ETHYLENE INSENSITIVE 3-like 4 protein Neighboring gene glycine-rich protein DOT1-like Neighboring gene ethylene-responsive transcription factor RAP2-7-like Neighboring gene histone H2B.2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal large subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein L35a-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Aet v5.0 Primary Assembly

    Genomic

    1. NC_053040.2 Reference Aet v5.0 Primary Assembly

      Range
      455307531..455309260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020308230.3 → XP_020163819.1  60S ribosomal protein L35a-1

      UniProtKB/TrEMBL
      A0A453PTL3, N1QZM0
      Conserved Domains (1) summary
      PTZ00041
      Location:3 → 112
      PTZ00041; 60S ribosomal protein L35a; Provisional
    Nucleotide Protein
    Heading Accession and Version

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