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    LOC109908308 retinoic acid receptor gamma-A-like [ Oncorhynchus kisutch (coho salmon) ]

    Gene ID: 109908308, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC109908308
    Gene description
    retinoic acid receptor gamma-A-like
    See related
    Ensembl:ENSOKIG00005031812
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus kisutch
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC109908308 in Genome Data Viewer
    Location:
    chromosome: LG17
    Exon count:
    9
    Annotation release Status Assembly LG Location
    101 current Okis_V2 (GCF_002021735.2) LG17 NC_034190.2 (74276270..74413228, complement)
    100 previous assembly Okis_V1 (GCF_002021735.1) LG17 NC_034190.1 (68464953..68534205, complement)

    Linkage Group LG17 - NC_034190.2Genomic Context describing neighboring genes Neighboring gene homeobox protein Hox-C13a-like Neighboring gene calcium-binding and coiled-coil domain-containing protein 1-like Neighboring gene nuclear receptor subfamily 1 group D member 1 Neighboring gene molybdate-anion transporter-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to corticotropin-releasing hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor gamma-A-like; retinoic acid receptor gamma-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Okis_V2 Primary Assembly

    Genomic

    1. NC_034190.2 Reference Okis_V2 Primary Assembly

      Range
      74276270..74413228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031794583.1 → XP_031650443.1  retinoic acid receptor gamma-like isoform X1

      UniProtKB/TrEMBL
      A0A8C7IMN1, A0A8C7INV4
      Related
      ENSOKIP00005074691.1, ENSOKIT00005079580.1
      Conserved Domains (2) summary
      cd06937
      Location:184 → 414
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:79 → 163
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    2. XM_031794584.1 → XP_031650444.1  retinoic acid receptor gamma-A-like isoform X2

      UniProtKB/TrEMBL
      A0A8C7IL37, A0A8C7IW02
      Related
      ENSOKIP00005074707.1, ENSOKIT00005079596.1
      Conserved Domains (2) summary
      cd06937
      Location:176 → 406
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:71 → 155
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases