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    LOC110254496 signal recognition particle subunit SRP68 [ Exaiptasia diaphana ]

    Gene ID: 110254496, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC110254496
    Gene description
    signal recognition particle subunit SRP68
    Locus tag
    AC249_AIPGENE22959
    See related
    EnsemblRapid:LOC110254496
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Exaiptasia diaphana
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia
    Also known as
    Srp68
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC110254496 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_11 current Aiptasia genome 1.1 (GCF_001417965.1) Unplaced Scaffold NW_018388410.1 (16383..19749)

    NW_018388410.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110254492 Neighboring gene putative ankyrin repeat protein RBE_0997 Neighboring gene uncharacterized LOC110254494

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018388410 Unplaced Scaffold Reference Aiptasia genome 1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida. Lehnert EM, et al. BMC Genomics, 2012 Jun 22. PMID 22726260, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 7S RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables endoplasmic reticulum signal peptide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signal recognition particle binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of signal recognition particle, endoplasmic reticulum targeting IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    signal recognition particle subunit SRP68

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001417965.1-RS_2023_11

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Aiptasia genome 1.1

    Genomic

    1. NW_018388410.1 Reference Aiptasia genome 1.1

      Range
      16383..19749
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021061503.2 → XP_020917162.2  signal recognition particle subunit SRP68

      UniProtKB/TrEMBL
      A0A913YA62
      Related
      XP_020917162.2, XM_021061503.2
      Conserved Domains (1) summary
      pfam16969
      Location:47 → 578
      SRP68; RNA-binding signal recognition particle 68
    Nucleotide Protein
    Heading Accession and Version

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