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    LOC110799261 carbonic anhydrase, chloroplastic-like [ Spinacia oleracea (spinach) ]

    Gene ID: 110799261, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC110799261
    Gene description
    carbonic anhydrase, chloroplastic-like
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Spinacia oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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    Genomic context

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    See LOC110799261 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_06 current BTI_SOV_V1 (GCF_020520425.1) 2 NC_079488.1 (80030484..80037276, complement)
    100 previous assembly ASM200726v1 (GCF_002007265.1) Unplaced Scaffold NW_018932464.1 (33877..38297, complement)

    Chromosome 2 - NC_079488.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 1-like Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene peroxidase 25 Neighboring gene uncharacterized LOC130467955 Neighboring gene SPX domain-containing protein 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Spinach chloroplastic carbonic anhydrase: nucleotide sequence analysis of cDNA. Burnell JN, et al. Plant Physiol, 1990 Jan. PMID 16667262, Free PMC Article
    2. Spinach carbonic anhydrase primary structure deduced from the sequence of a cDNA clone. Fawcett TW, et al. J Biol Chem, 1990 Apr 5. PMID 2108138
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbonate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbon utilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carbonic anhydrase, chloroplastic
    Names
    Carbonate dehydratase
    XP_021860182.2
    XP_056693092.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001426458.1 → NP_001413387.1  carbonic anhydrase, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      IADT01031971, J05403, M27295
      UniProtKB/Swiss-Prot
      P16016

    RefSeqs of Annotated Genomes: GCF_020520425.1-RS_2023_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BTI_SOV_V1 Primary Assembly

    Genomic

    1. NC_079488.1 Reference BTI_SOV_V1 Primary Assembly

      Range
      80030484..80037276 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_056837114.1 → XP_056693092.1  carbonic anhydrase, chloroplastic isoform X2

    2. XM_022004490.2 → XP_021860182.2  carbonic anhydrase, chloroplastic isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P16016.2 GenPept UniProtKB/Swiss-Prot:P16016

    Gene LinkOut

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