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    LOC111144742 exosome component 1 [ Enhydra lutris kenyoni (northern sea otter) ]

    Gene ID: 111144742, updated on 15-Mar-2024

    Summary

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    Gene symbol
    LOC111144742
    Gene description
    exosome component 1
    See related
    EnsemblRapid:ENSELKG00000017717
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Enhydra lutris kenyoni (sub-species: kenyoni)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Enhydra
    Orthologs
    human mouse all
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    Genomic context

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    See LOC111144742 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current ASM228890v2 (GCF_002288905.1) Unplaced Scaffold NW_019154096.1 (50101516..50111992, complement)

    NW_019154096.1Genomic Context describing neighboring genes Neighboring gene ribosomal RNA processing 12 homolog Neighboring gene phosphoglycerate mutase 1 Neighboring gene zinc finger DHHC-type palmitoyltransferase 16 Neighboring gene MMS19 homolog, cytosolic iron-sulfur assembly component

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019154096 Unplaced Scaffold Reference ASM228890v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exosome complex component CSL4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Enhydra lutris kenyoni Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM228890v2 Primary Assembly

    Genomic

    1. NW_019154096.1 Reference ASM228890v2 Primary Assembly

      Range
      50101516..50111992 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022499179.1 → XP_022354887.1  exosome complex component CSL4

      UniProtKB/TrEMBL
      A0A2Y9J1R8
      Conserved Domains (2) summary
      cd05791
      Location:74 → 166
      S1_CSL4; CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
      pfam14382
      Location:20 → 51
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region

    2. XM_022499180.1 → XP_022354888.1  exosome complex component CSL4

      UniProtKB/TrEMBL
      A0A2Y9J1R8
      Related
      ENSELKP00000023567.1, ENSELKT00000026151.1
      Conserved Domains (2) summary
      cd05791
      Location:74 → 166
      S1_CSL4; CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
      pfam14382
      Location:20 → 51
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region
    Nucleotide Protein
    Heading Accession and Version

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