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    LOC111535157 HLA class II histocompatibility antigen, DQ beta 1 chain [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

    Gene ID: 111535157, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC111535157
    Gene description
    HLA class II histocompatibility antigen, DQ beta 1 chain
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Piliocolobus tephrosceles
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
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    Genomic context

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    See LOC111535157 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current ASM277652v3 (GCF_002776525.3) 5 NC_045438.1 (137371631..137444552, complement)
    100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019361204.1 (2788..8069, complement)

    Chromosome 5 - NC_045438.1Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DRB1-16 beta chain-like Neighboring gene HLA class II histocompatibility antigen, DRB1-4 beta chain Neighboring gene HLA class II histocompatibility antigen, DQ alpha 1 chain-like Neighboring gene HLA class II histocompatibility antigen, DQ beta 1 chain Neighboring gene HLA class II histocompatibility antigen, DQ alpha 2 chain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables MHC class II protein complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in antigen processing and presentation of exogenous peptide antigen via MHC class II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immunoglobulin production involved in immunoglobulin-mediated immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptide antigen assembly with MHC class II protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of T cell activation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MHC class II protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DQ beta 1 chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM277652v3

    Genomic

    1. NC_045438.1 Reference ASM277652v3

      Range
      137371631..137444552 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026451062.2 → XP_026306847.2  LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DQ beta 1 chain

      UniProtKB/TrEMBL
      A0A8C9H288
      Conserved Domains (2) summary
      pfam00969
      Location:53 → 125
      MHC_II_beta; Class II histocompatibility antigen, beta domain
      cd21001
      Location:134 → 230
      IgC1_MHC_II_beta_HLA-DQ_I-A; Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain of histocompatibility antigen (HLA) DQ and I-A; member of the C1-set of Ig superfamily (IgSF) domains
    Nucleotide Protein
    Heading Accession and Version

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