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    LOC111818946 40S ribosomal protein S13-like [ Octodon degus (degu) ]

    Gene ID: 111818946, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111818946
    Gene description
    40S ribosomal protein S13-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Octodon degus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
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    Genomic context

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    See LOC111818946 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524684.1 (1618431..1618820, complement)

    NW_004524684.1Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene protein tyrosine phosphatase non-receptor type 12 Neighboring gene round spermatid basic protein 1 like Neighboring gene small nucleolar RNA U13 Neighboring gene small nucleolar RNA U13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004524684 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small ribosomal subunit rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S13-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference OctDeg1.0 Primary Assembly

    Genomic

    1. NW_004524684.1 Reference OctDeg1.0 Primary Assembly

      Range
      1618431..1618820 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023724313.1 → XP_023580081.1  40S ribosomal protein S13-like

      UniProtKB/TrEMBL
      A0A6P6F6T3
      Conserved Domains (1) summary
      cl26807
      Location:3 → 95
      Ribosomal_S13_N; Ribosomal S13/S15 N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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