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    rnf170 ring finger protein 170 [ Oncorhynchus tshawytscha (Chinook salmon) ]

    Gene ID: 112237851, updated on 18-Jun-2024

    Summary

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    Gene symbol
    rnf170
    Gene description
    ring finger protein 170
    See related
    Ensembl:ENSOTSG00005012945
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus tshawytscha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Orthologs
    zebrafish all
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    Genomic context

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    See rnf170 in Genome Data Viewer
    Location:
    chromosome: LG09
    Exon count:
    7
    Annotation release Status Assembly LG Location
    101 current Otsh_v2.0 (GCF_018296145.1) LG09 NC_056437.1 (4432436..4439284, complement)
    100 previous assembly Otsh_v1.0 (GCF_002872995.1) Unplaced Scaffold NW_020129354.1 (49660..63998, complement)

    Linkage Group LG09 - NC_056437.1Genomic Context describing neighboring genes Neighboring gene MOB kinase activator 3B-like Neighboring gene JunE proto-oncogene, AP-1 transcription factor subunit Neighboring gene hook microtubule-tethering protein 3 Neighboring gene uncharacterized LOC121847133

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNF170

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Otsh_v2.0 Primary Assembly

    Genomic

    1. NC_056437.1 Reference Otsh_v2.0 Primary Assembly

      Range
      4432436..4439284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024406443.2 → XP_024262211.2  E3 ubiquitin-protein ligase RNF170

      UniProtKB/TrEMBL
      A0A8C8F143
      Related
      ENSOTSP00005027565.2, ENSOTST00005029768.2
      Conserved Domains (2) summary
      PLN03208
      Location:88 → 200
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16553
      Location:91 → 134
      RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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