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    sxc O-linked N-acetylglucosamine (GlcNAc) transferase sxc [ Trichoplusia ni (cabbage looper) ]

    Gene ID: 113498372, updated on 15-May-2024

    Summary

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    Gene symbol
    sxc
    Gene description
    O-linked N-acetylglucosamine (GlcNAc) transferase sxc
    See related
    EnsemblRapid:ENSNTCG00000013328
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trichoplusia ni
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia
    Orthologs
    fruit fly all
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    Genomic context

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    See sxc in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current tn1 (GCF_003590095.1) 10 NC_039487.1 (4763070..4775722)

    Chromosome 10 - NC_039487.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113498024 Neighboring gene uncharacterized LOC113498023 Neighboring gene protein inturned Neighboring gene toll-like receptor 7 Neighboring gene possible lysine-specific histone demethylase 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_039487.1 Chromosome 10 Reference tn1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome responses of the host Trichoplusia ni to infection by the baculovirus Autographa californica multiple nucleopolyhedrovirus. Chen YR, et al. J Virol, 2014 Dec. PMID 25231311, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein N-acetylglucosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein O-linked glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Trichoplusia ni Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference tn1

    Genomic

    1. NC_039487.1 Reference tn1

      Range
      4763070..4775722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026878390.1 → XP_026734191.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

      UniProtKB/TrEMBL
      A0A7E5W1N0
      Conserved Domains (3) summary
      sd00006
      Location:254 → 281
      TPR; TPR repeat [structural motif]
      pfam13844
      Location:581 → 1045
      Glyco_transf_41; Glycosyl transferase family 41
      cl26002
      Location:34 → 562
      TPR_11; TPR repeat

    2. XM_026878391.1 → XP_026734192.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

      UniProtKB/TrEMBL
      A0A7E5W0Y1
      Related
      ENSNTCP00000017348.1, ENSNTCT00000021354.1
      Conserved Domains (3) summary
      sd00006
      Location:56 → 83
      TPR; TPR repeat [structural motif]
      pfam13844
      Location:383 → 847
      Glyco_transf_41; Glycosyl transferase family 41
      cl26002
      Location:12 → 364
      TPR_11; TPR repeat
    Nucleotide Protein
    Heading Accession and Version

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