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    atxn2 ataxin 2 [ Echeneis naucrates (live sharksucker) ]

    Gene ID: 115049453, updated on 17-Mar-2024

    Summary

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    Gene symbol
    atxn2
    Gene description
    ataxin 2
    See related
    Ensembl:ENSENLG00000003053
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Echeneis naucrates
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis
    Orthologs
    human zebrafish all
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    Genomic context

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    See atxn2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    100 current fEcheNa1.1 (GCF_900963305.1) 9 NC_042519.1 (19246339..19263622, complement)

    Chromosome 9 - NC_042519.1Genomic Context describing neighboring genes Neighboring gene PH domain containing endocytic trafficking adaptor 1 Neighboring gene SH2B adaptor protein 3 Neighboring gene MAPK activated protein kinase 5 Neighboring gene osteoclast stimulating factor 1 Neighboring gene nicotinamide riboside kinase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042519.1 Chromosome 9 Reference fEcheNa1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in stress granule assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ataxin-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Echeneis naucrates Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fEcheNa1.1 Primary Assembly

    Genomic

    1. NC_042519.1 Reference fEcheNa1.1 Primary Assembly

      Range
      19246339..19263622 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029511688.1 → XP_029367548.1  ataxin-2-like isoform X3

      UniProtKB/TrEMBL
      A0A665THV3
      Conserved Domains (5) summary
      PHA03247
      Location:338 → 784
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:150 → 348
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:205 → 266
      LsmAD; LsmAD domain
      pfam09770
      Location:739 → 988
      PAT1; Topoisomerase II-associated protein PAT1
      pfam14438
      Location:56 → 132
      SM-ATX; Ataxin 2 SM domain

    2. XM_029511687.1 → XP_029367547.1  ataxin-2-like isoform X2

      UniProtKB/TrEMBL
      A0A665T9J4, A0A665THV3
      Related
      ENSENLP00000006514.1, ENSENLT00000006807.1
      Conserved Domains (3) summary
      PHA03247
      Location:300 → 878
      PHA03247; large tegument protein UL36; Provisional
      pfam06741
      Location:205 → 266
      LsmAD; LsmAD domain
      pfam14438
      Location:56 → 132
      SM-ATX; Ataxin 2 SM domain

    3. XM_029511686.1 → XP_029367546.1  ataxin-2-like isoform X1

      UniProtKB/TrEMBL
      A0A665THV3
      Conserved Domains (4) summary
      PHA03247
      Location:302 → 885
      PHA03247; large tegument protein UL36; Provisional
      pfam06741
      Location:205 → 266
      LsmAD; LsmAD domain
      pfam09770
      Location:763 → 1012
      PAT1; Topoisomerase II-associated protein PAT1
      pfam14438
      Location:56 → 132
      SM-ATX; Ataxin 2 SM domain

    4. XM_029511689.1 → XP_029367549.1  ataxin-2-like isoform X4

      Conserved Domains (2) summary
      PHA03247
      Location:176 → 663
      PHA03247; large tegument protein UL36; Provisional
      pfam09770
      Location:571 → 821
      PAT1; Topoisomerase II-associated protein PAT1

    5. XM_029511691.1 → XP_029367551.1  ataxin-2-like isoform X4

      Conserved Domains (2) summary
      PHA03247
      Location:176 → 663
      PHA03247; large tegument protein UL36; Provisional
      pfam09770
      Location:571 → 821
      PAT1; Topoisomerase II-associated protein PAT1
    Nucleotide Protein
    Heading Accession and Version

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