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    LOC115081150 toll-like receptor 13 [ Rhinatrema bivittatum (two-lined caecilian) ]

    Gene ID: 115081150, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC115081150
    Gene description
    toll-like receptor 13
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhinatrema bivittatum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
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    Genomic context

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    See LOC115081150 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current aRhiBiv1.1 (GCF_901001135.1) 19 NC_042633.1 (21793280..21796168)

    Chromosome 19 - NC_042633.1Genomic Context describing neighboring genes Neighboring gene lemur tyrosine kinase 3 Neighboring gene uncharacterized LOC115081129 Neighboring gene cytohesin 2 Neighboring gene potassium inwardly rectifying channel subfamily J member 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042633.1 Chromosome 19 Reference aRhiBiv1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in toll-like receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: toll-like receptor 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aRhiBiv1.1 Primary Assembly

    Genomic

    1. NC_042633.1 Reference aRhiBiv1.1 Primary Assembly

      Range
      21793280..21796168
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029585656.1 → XP_029441516.1  LOW QUALITY PROTEIN: toll-like receptor 13

      Conserved Domains (6) summary
      smart00255
      Location:795 → 899
      TIR; Toll - interleukin 1 - resistance
      PLN00113
      Location:56 → 488
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00031
      Location:682 → 694
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:44 → 63
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:604 → 668
      LRR_8; Leucine rich repeat
      NF033189
      Location:539 → 692
      internalin_A; class 1 internalin InlA
    Nucleotide Protein
    Heading Accession and Version

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