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    LOC115114112 low-density lipoprotein receptor-related protein 8-like [ Oncorhynchus nerka (sockeye salmon) ]

    Gene ID: 115114112, updated on 9-May-2024

    Summary

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    Gene symbol
    LOC115114112
    Gene description
    low-density lipoprotein receptor-related protein 8-like
    See related
    EnsemblRapid:ENSONEG00000004192
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus nerka
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC115114112 in Genome Data Viewer
    Location:
    chromosome: LG9b
    Exon count:
    20
    Annotation release Status Assembly LG Location
    RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG9b NC_088424.1 (3071144..3277618)
    100 previous assembly Oner_1.0 (GCF_006149115.1) LG9b NC_042563.1 (5523381..5717091)

    Linkage Group LG9b - NC_088424.1Genomic Context describing neighboring genes Neighboring gene SEC62 homolog, preprotein translocation factor Neighboring gene transmembrane protein 125-like Neighboring gene KN motif and ankyrin repeat domain-containing protein 1-like Neighboring gene angiopoietin-related protein 3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hormone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in receptor-mediated endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    low-density lipoprotein receptor-related protein 8-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oner_Uvic_2.0 Primary Assembly

    Genomic

    1. NC_088424.1 Reference Oner_Uvic_2.0 Primary Assembly

      Range
      3071144..3277618
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_065013892.1 → XP_064869964.1  low-density lipoprotein receptor-related protein 8-like

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases