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    rpl13a ribosomal protein L13a [ Salmo trutta (river trout) ]

    Gene ID: 115172869, updated on 17-Mar-2024

    Summary

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    Gene symbol
    rpl13a
    Gene description
    ribosomal protein L13a
    See related
    Ensembl:ENSSTUG00000015660
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo trutta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Orthologs
    human zebrafish all
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    Genomic context

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    See rpl13a in Genome Data Viewer
    Location:
    chromosome: 33
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current fSalTru1.1 (GCF_901001165.1) 33 NC_042989.1 (33318099..33322791)

    Chromosome 33 - NC_042989.1Genomic Context describing neighboring genes Neighboring gene zinc metallopeptidase, STE24 homolog Neighboring gene ATP synthase inhibitory factor subunit 1b Neighboring gene small nucleolar RNA Z195/SNORD33/SNORD32 family Neighboring gene small nucleolar RNA SNORD50 Neighboring gene small nucleolar RNA Z195/SNORD33/SNORD32 family Neighboring gene heterogeneous nuclear ribonucleoprotein R Neighboring gene uncharacterized LOC115172871

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042989.1 Chromosome 33 Reference fSalTru1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein L13a
    Names
    Transplantation antigen P198 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalTru1.1 Primary Assembly

    Genomic

    1. NC_042989.1 Reference fSalTru1.1 Primary Assembly

      Range
      33318099..33322791
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029730684.1 → XP_029586544.1  60S ribosomal protein L13a isoform X2

      UniProtKB/TrEMBL
      A0A673YQA9, A0A673YR45
      Related
      ENSSTUP00000036869.1, ENSSTUT00000038527.1
      Conserved Domains (1) summary
      PTZ00068
      Location:5 → 202
      PTZ00068; 60S ribosomal protein L13a; Provisional

    2. XM_029730683.1 → XP_029586543.1  60S ribosomal protein L13a isoform X1

      Conserved Domains (1) summary
      PTZ00068
      Location:58 → 252
      PTZ00068; 60S ribosomal protein L13a; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q91487.1 GenPept UniProtKB/Swiss-Prot:Q91487

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