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    CHD3 chromodomain helicase DNA binding protein 3 [ Suricata suricatta (meerkat) ]

    Gene ID: 115282579, updated on 17-Mar-2024

    Summary

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    Gene symbol
    CHD3
    Gene description
    chromodomain helicase DNA binding protein 3
    See related
    Ensembl:ENSSSUG00005019738
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Suricata suricatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Herpestidae; Suricata
    Orthologs
    human mouse all
    NEW
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    Genomic context

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    See CHD3 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    100 current meerkat_22Aug2017_6uvM2_HiC (GCF_006229205.1) 17 NC_043716.1 (2379326..2400553)

    Chromosome 17 - NC_043716.1Genomic Context describing neighboring genes Neighboring gene cytochrome b5 domain-containing protein 1 Neighboring gene N-alpha-acetyltransferase 38, NatC auxiliary subunit Neighboring gene uncharacterized LOC115282580 Neighboring gene small Cajal body-specific RNA 21 Neighboring gene uncharacterized LOC115282288 Neighboring gene uncharacterized LOC115282421 Neighboring gene ring finger protein 227

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_043716.1 Chromosome 17 Reference meerkat_22Aug2017_6uvM2_HiC

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NuRD complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Suricata suricatta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference meerkat_22Aug2017_6uvM2_HiC

    Genomic

    1. NC_043716.1 Reference meerkat_22Aug2017_6uvM2_HiC

      Range
      2379326..2400553
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029928694.1 → XP_029784554.1  chromodomain-helicase-DNA-binding protein 3 isoform X9

      UniProtKB/TrEMBL
      A0A673VB92
      Conserved Domains (13) summary
      PLN03142
      Location:760 → 1314
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1550 → 1736
      PHA03169; hypothetical protein; Provisional
      PHA03321
      Location:276 → 421
      PHA03321; tegument protein VP11/12; Provisional
      COG5034
      Location:365 → 467
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:422 → 464
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:499 → 541
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:669 → 723
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:546 → 624
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:777 → 1008
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1419 → 1558
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1353 → 1396
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:189 → 242
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1778 → 1905
      CHDCT2; CHDCT2 (NUC038) domain

    2. XM_029928700.1 → XP_029784560.1  chromodomain-helicase-DNA-binding protein 3 isoform X14

      UniProtKB/TrEMBL
      A0A673VB92

    3. XM_029928701.1 → XP_029784561.1  chromodomain-helicase-DNA-binding protein 3 isoform X15

      UniProtKB/TrEMBL
      A0A673VB92

    4. XM_029928702.1 → XP_029784562.1  chromodomain-helicase-DNA-binding protein 3 isoform X16

      UniProtKB/TrEMBL
      A0A673VB92

    5. XM_029928696.1 → XP_029784556.1  chromodomain-helicase-DNA-binding protein 3 isoform X11

      UniProtKB/TrEMBL
      A0A673VB92
      Conserved Domains (14) summary
      PLN03142
      Location:760 → 1314
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1550 → 1736
      PHA03169; hypothetical protein; Provisional
      PHA03321
      Location:276 → 421
      PHA03321; tegument protein VP11/12; Provisional
      COG5034
      Location:365 → 467
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      PRK07764
      Location:1907 → 2009
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cd15531
      Location:422 → 464
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:499 → 541
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:669 → 723
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:546 → 624
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:777 → 1008
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1419 → 1558
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1353 → 1396
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:189 → 242
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1778 → 1905
      CHDCT2; CHDCT2 (NUC038) domain

    6. XM_029928703.1 → XP_029784563.1  chromodomain-helicase-DNA-binding protein 3 isoform X17

      UniProtKB/TrEMBL
      A0A673VB92
      Conserved Domains (13) summary
      PLN03142
      Location:760 → 1314
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1550 → 1736
      PHA03169; hypothetical protein; Provisional
      PHA03321
      Location:276 → 421
      PHA03321; tegument protein VP11/12; Provisional
      COG5034
      Location:365 → 467
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:422 → 464
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:499 → 541
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:669 → 723
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:546 → 624
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:777 → 1008
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1419 → 1558
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1353 → 1396
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:189 → 242
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1778 → 1906
      CHDCT2; CHDCT2 (NUC038) domain

    7. XM_029928699.1 → XP_029784559.1  chromodomain-helicase-DNA-binding protein 3 isoform X13

      UniProtKB/TrEMBL
      A0A673VB92

    8. XM_029928691.1 → XP_029784551.1  chromodomain-helicase-DNA-binding protein 3 isoform X6

      UniProtKB/TrEMBL
      A0A673VB92

    9. XM_029928698.1 → XP_029784558.1  chromodomain-helicase-DNA-binding protein 3 isoform X12

      UniProtKB/TrEMBL
      A0A673VB92

    10. XM_029928689.1 → XP_029784549.1  chromodomain-helicase-DNA-binding protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A673VB92
      Conserved Domains (13) summary
      PLN03142
      Location:756 → 1310
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1546 → 1732
      PHA03169; hypothetical protein; Provisional
      PHA03321
      Location:276 → 417
      PHA03321; tegument protein VP11/12; Provisional
      COG5034
      Location:361 → 463
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:418 → 460
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:495 → 537
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:665 → 719
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:542 → 620
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:773 → 1004
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1415 → 1554
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1349 → 1392
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:189 → 242
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1774 → 1901
      CHDCT2; CHDCT2 (NUC038) domain

    11. XM_029928688.1 → XP_029784548.1  chromodomain-helicase-DNA-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A673VB92

    12. XM_029928704.1 → XP_029784564.1  chromodomain-helicase-DNA-binding protein 3 isoform X18

      UniProtKB/TrEMBL
      A0A673VB92

    13. XM_029928685.1 → XP_029784545.1  chromodomain-helicase-DNA-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A673VB92
      Conserved Domains (13) summary
      PLN03142
      Location:760 → 1314
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1550 → 1736
      PHA03169; hypothetical protein; Provisional
      PHA03321
      Location:276 → 421
      PHA03321; tegument protein VP11/12; Provisional
      COG5034
      Location:365 → 467
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:422 → 464
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:499 → 541
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:669 → 723
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:546 → 624
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:777 → 1008
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1419 → 1558
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1353 → 1396
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:189 → 242
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1778 → 1905
      CHDCT2; CHDCT2 (NUC038) domain

    14. XM_029928687.1 → XP_029784547.1  chromodomain-helicase-DNA-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A673VB92
      Conserved Domains (13) summary
      PLN03142
      Location:760 → 1314
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1550 → 1735
      PHA03169; hypothetical protein; Provisional
      PHA03321
      Location:276 → 421
      PHA03321; tegument protein VP11/12; Provisional
      COG5034
      Location:365 → 467
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:422 → 464
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:499 → 541
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:669 → 723
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:546 → 624
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:777 → 1008
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1419 → 1558
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1353 → 1396
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:189 → 242
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1777 → 1904
      CHDCT2; CHDCT2 (NUC038) domain

    15. XM_029928690.1 → XP_029784550.1  chromodomain-helicase-DNA-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A673VB92

    16. XM_029928692.1 → XP_029784552.1  chromodomain-helicase-DNA-binding protein 3 isoform X7

      UniProtKB/TrEMBL
      A0A673VB92

    17. XM_029928693.1 → XP_029784553.1  chromodomain-helicase-DNA-binding protein 3 isoform X8

      UniProtKB/TrEMBL
      A0A673VB92
      Related
      ENSSSUP00005030826.1, ENSSSUT00005035175.1

    18. XM_029928695.1 → XP_029784555.1  chromodomain-helicase-DNA-binding protein 3 isoform X10

      UniProtKB/TrEMBL
      A0A673VB92
      Conserved Domains (13) summary
      PLN03142
      Location:690 → 1244
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1480 → 1666
      PHA03169; hypothetical protein; Provisional
      PHA03321
      Location:206 → 351
      PHA03321; tegument protein VP11/12; Provisional
      COG5034
      Location:295 → 397
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15531
      Location:352 → 394
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:429 → 471
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:599 → 653
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:476 → 554
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:707 → 938
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1349 → 1488
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1283 → 1326
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:119 → 172
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1708 → 1835
      CHDCT2; CHDCT2 (NUC038) domain
    Nucleotide Protein
    Heading Accession and Version

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