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    sf1 splicing factor 1 [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

    Gene ID: 115438304, updated on 17-Mar-2024

    Summary

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    Gene symbol
    sf1
    Gene description
    splicing factor 1
    See related
    Ensembl:ENSSORG00005012880
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sphaeramia orbicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
    Orthologs
    human zebrafish all
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    Genomic context

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    See sf1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current fSphaOr1.1 (GCF_902148855.1) 18 NC_043974.1 (16111151..16123494)

    Chromosome 18 - NC_043974.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 4.1 Neighboring gene uncharacterized LOC115438940 Neighboring gene phosphorylase, glycogen, muscle b Neighboring gene protein c-ets-1-B-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_043974.1 Chromosome 18 Reference fSphaOr1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSphaOr1.1

    Genomic

    1. NC_043974.1 Reference fSphaOr1.1

      Range
      16111151..16123494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030161831.1 → XP_030017691.1  splicing factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A673ADT8
      Related
      ENSSORP00005026908.1, ENSSORT00005027691.1
      Conserved Domains (2) summary
      smart00343
      Location:356 → 370
      ZnF_C2HC; zinc finger
      COG5176
      Location:113 → 334
      MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

    2. XM_030161832.1 → XP_030017692.1  splicing factor 1 isoform X2

      Conserved Domains (2) summary
      smart00343
      Location:356 → 370
      ZnF_C2HC; zinc finger
      COG5176
      Location:113 → 334
      MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
    Nucleotide Protein
    Heading Accession and Version

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