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    aldh6a1 aldehyde dehydrogenase 6 family, member A1 [ Chanos chanos (milkfish) ]

    Gene ID: 115823598, updated on 17-Mar-2024

    Summary

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    Gene symbol
    aldh6a1
    Gene description
    aldehyde dehydrogenase 6 family, member A1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chanos chanos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gonorynchiformes; Chanidae; Chanos
    Orthologs
    human zebrafish all
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    Genomic context

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    See aldh6a1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current fChaCha1.1 (GCF_902362185.1) 10 NC_044504.1 (15409101..15425081)

    Chromosome 10 - NC_044504.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115823342 Neighboring gene glutathione S-transferase zeta 1 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 5a Neighboring gene coenzyme Q6 monooxygenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044504.1 Chromosome 10 Reference fChaCha1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables malonate-semialdehyde dehydrogenase (acetylating) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in thymine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in valine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chanos chanos Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fChaCha1.1 Primary Assembly

    Genomic

    1. NC_044504.1 Reference fChaCha1.1 Primary Assembly

      Range
      15409101..15425081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030787661.1 → XP_030643521.1  methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A6J2WJL2
      Conserved Domains (1) summary
      cd07085
      Location:31 → 507
      ALDH_F6_MMSDH; Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2

    2. XM_030787662.1 → XP_030643522.1  methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0A6J2WIJ8
      Conserved Domains (1) summary
      cd07085
      Location:30 → 506
      ALDH_F6_MMSDH; Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2
    Nucleotide Protein
    Heading Accession and Version

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