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    RNF144B ring finger protein 144B [ Mustela erminea (ermine) ]

    Gene ID: 116589204, updated on 18-Mar-2024

    Summary

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    Gene symbol
    RNF144B
    Gene description
    ring finger protein 144B
    See related
    EnsemblRapid:ENSMERG00000004062
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mustela erminea
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
    Orthologs
    human mouse all
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    Genomic context

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    See RNF144B in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current mMusErm1.Pri (GCF_009829155.1) 4 NC_045617.1 (141407860..141578031)

    Chromosome 4 - NC_045617.1Genomic Context describing neighboring genes Neighboring gene thiopurine S-methyltransferase Neighboring gene lysine demethylase 1B Neighboring gene 40S ribosomal protein S2-like Neighboring gene DEK proto-oncogene Neighboring gene dynein light chain 1, cytoplasmic-like Neighboring gene uncharacterized LOC116587859

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045617.1 Chromosome 4 Reference mMusErm1.Pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrial membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNF144B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mustela erminea Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mMusErm1.Pri Primary Assembly

    Genomic

    1. NC_045617.1 Reference mMusErm1.Pri Primary Assembly

      Range
      141407860..141578031
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032341202.1 → XP_032197093.1  E3 ubiquitin-protein ligase RNF144B isoform X1

      Related
      ENSMERP00000006690.1, ENSMERT00000007477.1
      Conserved Domains (3) summary
      smart00647
      Location:101 → 166
      IBR; In Between Ring fingers
      cd16778
      Location:28 → 84
      mRING-HC-C4C4_RBR_RNF144B; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144B (RNF144B)
      pfam01485
      Location:190 → 225
      IBR; IBR domain, a half RING-finger domain

    2. XM_032341200.1 → XP_032197091.1  E3 ubiquitin-protein ligase RNF144B isoform X1

      Conserved Domains (3) summary
      smart00647
      Location:101 → 166
      IBR; In Between Ring fingers
      cd16778
      Location:28 → 84
      mRING-HC-C4C4_RBR_RNF144B; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144B (RNF144B)
      pfam01485
      Location:190 → 225
      IBR; IBR domain, a half RING-finger domain

    3. XM_032341201.1 → XP_032197092.1  E3 ubiquitin-protein ligase RNF144B isoform X1

      Conserved Domains (3) summary
      smart00647
      Location:101 → 166
      IBR; In Between Ring fingers
      cd16778
      Location:28 → 84
      mRING-HC-C4C4_RBR_RNF144B; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144B (RNF144B)
      pfam01485
      Location:190 → 225
      IBR; IBR domain, a half RING-finger domain

    4. XM_032341203.1 → XP_032197094.1  E3 ubiquitin-protein ligase RNF144B isoform X1

      Conserved Domains (3) summary
      smart00647
      Location:101 → 166
      IBR; In Between Ring fingers
      cd16778
      Location:28 → 84
      mRING-HC-C4C4_RBR_RNF144B; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144B (RNF144B)
      pfam01485
      Location:190 → 225
      IBR; IBR domain, a half RING-finger domain

    5. XM_032341204.1 → XP_032197095.1  E3 ubiquitin-protein ligase RNF144B isoform X2

      Conserved Domains (3) summary
      smart00647
      Location:99 → 164
      IBR; In Between Ring fingers
      pfam01485
      Location:188 → 223
      IBR; IBR domain, a half RING-finger domain
      cl17238
      Location:61 → 88
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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