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    LOC116833477 PHD finger protein 20-like protein 1 [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

    Gene ID: 116833477, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC116833477
    Gene description
    PHD finger protein 20-like protein 1
    See related
    Ensembl:ENSCABG00000013699
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonoidis abingdonii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
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    Genomic context

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    See LOC116833477 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022643644.1 (5266..64291, complement)

    NW_022643644.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 71 Neighboring gene dynein axonemal assembly factor 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022643644 Unplaced Scaffold Reference ASM359739v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NSL complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 20-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM359739v1

    Genomic

    1. NW_022643644.1 Reference ASM359739v1

      Range
      5266..64291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032795053.1 → XP_032650944.1  PHD finger protein 20-like protein 1 isoform X2

      Conserved Domains (3) summary
      pfam16660
      Location:313 → 378
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cd20454
      Location:86 → 143
      Tudor_PHF20L1; Tudor domain found in PHD finger protein 20-like protein 1 (PHF20L1) and similar proteins
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    2. XM_032795052.1 → XP_032650943.1  PHD finger protein 20-like protein 1 isoform X1

      Conserved Domains (3) summary
      pfam16660
      Location:312 → 377
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cd20454
      Location:86 → 143
      Tudor_PHF20L1; Tudor domain found in PHD finger protein 20-like protein 1 (PHF20L1) and similar proteins
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    3. XM_032795054.1 → XP_032650945.1  PHD finger protein 20-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0ITN2
      Conserved Domains (3) summary
      pfam16660
      Location:313 → 378
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cd20454
      Location:86 → 143
      Tudor_PHF20L1; Tudor domain found in PHD finger protein 20-like protein 1 (PHF20L1) and similar proteins
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    4. XM_032795056.1 → XP_032650947.1  PHD finger protein 20-like protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0ITN2
      Related
      ENSCABP00000018543.1, ENSCABT00000020315.1
      Conserved Domains (3) summary
      pfam16660
      Location:313 → 378
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cd20454
      Location:86 → 143
      Tudor_PHF20L1; Tudor domain found in PHD finger protein 20-like protein 1 (PHF20L1) and similar proteins
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    5. XM_032795057.1 → XP_032650948.1  PHD finger protein 20-like protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8C0ITN2
      Related
      ENSCABP00000018546.1, ENSCABT00000020318.1
      Conserved Domains (3) summary
      pfam16660
      Location:313 → 378
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cd20454
      Location:86 → 143
      Tudor_PHF20L1; Tudor domain found in PHD finger protein 20-like protein 1 (PHF20L1) and similar proteins
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    6. XM_032795058.1 → XP_032650949.1  PHD finger protein 20-like protein 1 isoform X6

      Conserved Domains (2) summary
      cd20454
      Location:86 → 144
      Tudor_PHF20L1; Tudor domain found in PHD finger protein 20-like protein 1 (PHF20L1) and similar proteins
      cl17705
      Location:3 → 68
      MBT; mbt repeat
    Nucleotide Protein
    Heading Accession and Version

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