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    Nploc4 NPL4 homolog, ubiquitin recognition factor [ Arvicola amphibius (Eurasian water vole) ]

    Gene ID: 119811079, updated on 21-Mar-2024

    Summary

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    Gene symbol
    Nploc4
    Gene description
    NPL4 homolog, ubiquitin recognition factor
    See related
    EnsemblRapid:ENSAAPG00005005980
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arvicola amphibius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
    Orthologs
    human mouse all
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    Genomic context

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    See Nploc4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    101 current mArvAmp1.2 (GCF_903992535.2) 4 NC_052050.1 (1470213..1518794)
    100 previous assembly mArvAmp1.1 (GCF_903992535.1) 4 NC_052050.1 (1470213..1518794)

    Chromosome 4 - NC_052050.1Genomic Context describing neighboring genes Neighboring gene oxidoreductase like domain containing 1 Neighboring gene phosphodiesterase 6G Neighboring gene tetraspanin 10 Neighboring gene FA core complex associated protein 100 Neighboring gene fascin actin-bundling protein 2, retinal

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear protein localization protein 4 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mArvAmp1.2

    Genomic

    1. NC_052050.1 Reference mArvAmp1.2

      Range
      1470213..1518794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038324645.1 → XP_038180573.1  nuclear protein localization protein 4 homolog isoform X1

      Related
      ENSAAPP00005007701.1, ENSAAPT00005008428.2
      Conserved Domains (5) summary
      smart00547
      Location:584 → 606
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:584 → 603
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam05020
      Location:105 → 245
      zf-NPL4; NPL4 family, putative zinc binding region
      pfam05021
      Location:249 → 556
      NPL4; NPL4 family
      pfam11543
      Location:6 → 79
      UN_NPL4; Nuclear pore localization protein NPL4

    2. XM_038324646.1 → XP_038180574.1  nuclear protein localization protein 4 homolog isoform X2

      Conserved Domains (3) summary
      sd00029
      Location:496 → 515
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam05020
      Location:17 → 157
      zf-NPL4; NPL4 family, putative zinc binding region
      pfam05021
      Location:161 → 468
      NPL4; NPL4 family
    Nucleotide Protein
    Heading Accession and Version

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