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    hnrnph3 heterogeneous nuclear ribonucleoprotein H3 (2H9) [ Micropterus salmoides (largemouth bass) ]

    Gene ID: 119890184, updated on 21-Mar-2024

    Summary

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    Gene symbol
    hnrnph3
    Gene description
    heterogeneous nuclear ribonucleoprotein H3 (2H9)
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Micropterus salmoides
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
    Orthologs
    human zebrafish all
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    Genomic context

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    See hnrnph3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024044348.1 (24629382..24644647)

    NW_024044348.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein Xfin-like Neighboring gene DNA replication helicase/nuclease 2 Neighboring gene phenazine biosynthesis-like domain-containing protein 1 Neighboring gene RUN and FYVE domain containing 2 Neighboring gene uncharacterized LOC119890708

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024044348 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein H3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1485139v1 Primary Assembly

    Genomic

    1. NW_024044348.1 Reference ASM1485139v1 Primary Assembly

      Range
      24629382..24644647
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038701301.1 → XP_038557229.1  heterogeneous nuclear ribonucleoprotein H3 isoform X2

      Conserved Domains (3) summary
      cd12735
      Location:314 → 388
      RRM3_hnRNPH3; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins
      cd12732
      Location:109 → 204
      RRM2_hnRNPH3; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins
      cl17169
      Location:43 → 104
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_038701302.1 → XP_038557230.1  heterogeneous nuclear ribonucleoprotein H3 isoform X3

      Conserved Domains (3) summary
      cd12735
      Location:313 → 387
      RRM3_hnRNPH3; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins
      cd12732
      Location:108 → 203
      RRM2_hnRNPH3; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins
      cl17169
      Location:43 → 103
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_038701300.1 → XP_038557228.1  heterogeneous nuclear ribonucleoprotein H3 isoform X1

      Conserved Domains (3) summary
      cd12735
      Location:331 → 405
      RRM3_hnRNPH3; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins
      cd12729
      Location:43 → 121
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12732
      Location:126 → 221
      RRM2_hnRNPH3; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins

    4. XM_038701306.1 → XP_038557234.1  heterogeneous nuclear ribonucleoprotein H3 isoform X4

      Conserved Domains (3) summary
      cd12729
      Location:7 → 85
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12732
      Location:90 → 185
      RRM2_hnRNPH3; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins
      cl17169
      Location:295 → 369
      RRM_SF; RNA recognition motif (RRM) superfamily

    5. XM_038701307.1 → XP_038557235.1  heterogeneous nuclear ribonucleoprotein H3 isoform X5

      Conserved Domains (2) summary
      cd12732
      Location:73 → 168
      RRM2_hnRNPH3; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins
      cl17169
      Location:278 → 352
      RRM_SF; RNA recognition motif (RRM) superfamily

    6. XM_038701309.1 → XP_038557237.1  heterogeneous nuclear ribonucleoprotein H3 isoform X6

      Conserved Domains (2) summary
      cd12732
      Location:72 → 167
      RRM2_hnRNPH3; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins
      cl17169
      Location:277 → 351
      RRM_SF; RNA recognition motif (RRM) superfamily

    7. XM_038701308.1 → XP_038557236.1  heterogeneous nuclear ribonucleoprotein H3 isoform X5

      Conserved Domains (2) summary
      cd12732
      Location:73 → 168
      RRM2_hnRNPH3; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins
      cl17169
      Location:278 → 352
      RRM_SF; RNA recognition motif (RRM) superfamily

    8. XM_038701310.1 → XP_038557238.1  heterogeneous nuclear ribonucleoprotein H3 isoform X6

      Conserved Domains (2) summary
      cd12732
      Location:72 → 167
      RRM2_hnRNPH3; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins
      cl17169
      Location:277 → 351
      RRM_SF; RNA recognition motif (RRM) superfamily

    9. XM_038701304.1 → XP_038557232.1  heterogeneous nuclear ribonucleoprotein H3 isoform X4

      Conserved Domains (3) summary
      cd12729
      Location:7 → 85
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12732
      Location:90 → 185
      RRM2_hnRNPH3; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins
      cl17169
      Location:295 → 369
      RRM_SF; RNA recognition motif (RRM) superfamily

    10. XM_038701305.1 → XP_038557233.1  heterogeneous nuclear ribonucleoprotein H3 isoform X4

      Conserved Domains (3) summary
      cd12729
      Location:7 → 85
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12732
      Location:90 → 185
      RRM2_hnRNPH3; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins
      cl17169
      Location:295 → 369
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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