U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC119965092 matrin-3-like [ Scyliorhinus canicula (smaller spotted catshark) ]

    Gene ID: 119965092, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC119965092
    Gene description
    matrin-3-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scyliorhinus canicula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC119965092 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current sScyCan1.1 (GCF_902713615.1) 4 NC_052149.1 (152921683..153064080, complement)

    Chromosome 4 - NC_052149.1Genomic Context describing neighboring genes Neighboring gene zinc finger MYM-type protein 1-like Neighboring gene immunoglobulin heavy constant gamma 2-like Neighboring gene uncharacterized LOC119965093 Neighboring gene matrin-3-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_052149.1 Chromosome 4 Reference sScyCan1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOW QUALITY PROTEIN: matrin-3-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sScyCan1.1 Primary Assembly

    Genomic

    1. NC_052149.1 Reference sScyCan1.1 Primary Assembly

      Range
      152921683..153064080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038795375.1 → XP_038651303.1  LOW QUALITY PROTEIN: matrin-3-like

      Conserved Domains (4) summary
      smart00451
      Location:891 → 925
      ZnF_U1; U1-like zinc finger
      COG5271
      Location:660 → 770
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      cd12436
      Location:450 → 525
      RRM1_2_MATR3_like; RNA recognition motif 1 (RRM1) and 2 (RRM2) found in the matrin 3 family of nuclear proteins
      cl17169
      Location:541 → 620
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version