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    jarid2b jumonji and AT-rich interaction domain containing 2b [ Scyliorhinus canicula (smaller spotted catshark) ]

    Gene ID: 119965975, updated on 21-Mar-2024

    Summary

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    Gene symbol
    jarid2b
    Gene description
    jumonji and AT-rich interaction domain containing 2b
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scyliorhinus canicula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
    Orthologs
    human zebrafish all
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    Genomic context

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    See jarid2b in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current sScyCan1.1 (GCF_902713615.1) 5 NC_052150.1 (50947271..51483729)

    Chromosome 5 - NC_052150.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene dystrobrevin binding protein 1a Neighboring gene uncharacterized LOC119965977

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052150.1 Chromosome 5 Reference sScyCan1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Jumonji
    Names
    jumonji, AT rich interactive domain 2b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sScyCan1.1 Primary Assembly

    Genomic

    1. NC_052150.1 Reference sScyCan1.1 Primary Assembly

      Range
      50947271..51483729
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038797042.1 → XP_038652970.1  protein Jumonji isoform X1

      Conserved Domains (5) summary
      smart00545
      Location:583 → 624
      JmjN; Small domain found in the jumonji family of transcription factors
      cd16870
      Location:647 → 758
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins
      pfam02373
      Location:938 → 1053
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:1161 → 1214
      zf-C5HC2; C5HC2 zinc finger
      NF038052
      Location:309 → 470
      histone_lik_HC2; histone H1-like DNA-binding protein Hc2

    2. XM_038797041.1 → XP_038652969.1  protein Jumonji isoform X1

      Conserved Domains (5) summary
      smart00545
      Location:583 → 624
      JmjN; Small domain found in the jumonji family of transcription factors
      cd16870
      Location:647 → 758
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins
      pfam02373
      Location:938 → 1053
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:1161 → 1214
      zf-C5HC2; C5HC2 zinc finger
      NF038052
      Location:309 → 470
      histone_lik_HC2; histone H1-like DNA-binding protein Hc2

    3. XM_038797044.1 → XP_038652972.1  protein Jumonji isoform X2

      Conserved Domains (4) summary
      smart00545
      Location:559 → 600
      JmjN; Small domain found in the jumonji family of transcription factors
      cd16870
      Location:623 → 734
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins
      pfam02373
      Location:914 → 1029
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:1137 → 1190
      zf-C5HC2; C5HC2 zinc finger

    4. XM_038797046.1 → XP_038652974.1  protein Jumonji isoform X4

      Conserved Domains (4) summary
      smart00545
      Location:455 → 496
      JmjN; Small domain found in the jumonji family of transcription factors
      cd16870
      Location:519 → 630
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins
      pfam02373
      Location:810 → 925
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:1033 → 1086
      zf-C5HC2; C5HC2 zinc finger

    5. XM_038797045.1 → XP_038652973.1  protein Jumonji isoform X3

      Conserved Domains (4) summary
      smart00545
      Location:539 → 580
      JmjN; Small domain found in the jumonji family of transcription factors
      cd16870
      Location:603 → 714
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins
      pfam02373
      Location:894 → 1009
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:1117 → 1170
      zf-C5HC2; C5HC2 zinc finger
    Nucleotide Protein
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